Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_O15
         (1231 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    26   0.59 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    25   1.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   5.5  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 26.2 bits (55), Expect = 0.59
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = -3

Query: 632 SLMLDILNTFLMQGNSRLLFSQLKDHHHLSLVRLIVFQLHFLDCLVQLGVAVF 474
           +++L + +   + GN+ ++ + +++ +  +     V  L F DCLV L V  F
Sbjct: 49  AILLFLFSVATVFGNTLVILAVVRERYLHTATNYFVTSLAFADCLVGLVVMPF 101


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 603 SDAGQ*SPFVFSVEGPSSFITGSVDCISITFSGLFGPVRSGCFSS 469
           S+A   S   FS+E  S  +   +D   + F GL   +  GC++S
Sbjct: 291 SEAAARSFVPFSIERSSQSVAEVMDRNGVLFFGLLSDLAIGCWNS 335


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 427 TLFINFLCYLIEYE*SHQCFMKLINIKLFKLLVSRLRK 314
           T+FIN L +L +    +    K+I   + ++L+  LRK
Sbjct: 338 TMFINILKFLKQKYVKNSKLEKVIKHDILRMLIIDLRK 375


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 290,542
Number of Sequences: 438
Number of extensions: 5738
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 41901987
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)