Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_O12
         (1261 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    28   3.1  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    27   4.1  

>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 486 SHCDLV*NKIENYTTNPK--D*FSRINLY 566
           S C+ V N++EN TT P   + FS IN Y
Sbjct: 383 SQCETVKNELENVTTTPNSTEAFSEINEY 411


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 24/82 (29%), Positives = 38/82 (46%)
 Frame = -3

Query: 671 LFDTNLQSNKS*NLARIFRYKKNC*PQFVVL*QFVIQIYTRKLIFRICGVIFNFILY*IA 492
           + +T+L S+ S N   IFR       Q + L +FV Q    K       V FN+  +  A
Sbjct: 1   MVETDLMSSHSSNWKEIFRTHSIA--QTIQLEKFVSQQIEEKGRELQQNVCFNYQSFIEA 58

Query: 491 MRSARIKSNNVQKIILSRIEFQ 426
             +     NN++K++ +  EFQ
Sbjct: 59  SENLSNIRNNLEKVLQNSYEFQ 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,061,957
Number of Sequences: 5004
Number of extensions: 77886
Number of successful extensions: 121
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 683589232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)