Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_O12
         (1261 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0527 - 4177928-4178235,4178849-4181438                           30   4.4  

>12_01_0527 - 4177928-4178235,4178849-4181438
          Length = 965

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -3

Query: 476 IKSNNVQKIILSRIEFQPTLRHSDRRHNA*RGEVQISGPNFQSLTRILNKFNH 318
           +  NN+   I S I+    L   D  +N   GEV  S    +SLT+++  +NH
Sbjct: 524 LSHNNLSGSIPSNIDLLSDLEILDLSYNNLYGEVPASLAKLESLTQLVLSYNH 576


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,000,208
Number of Sequences: 37544
Number of extensions: 492741
Number of successful extensions: 2685
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2228
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3899283420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)