Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_O11
(1233 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0328 + 16437947-16438091,16439953-16440062,16440446-164405... 93 5e-19
02_05_0153 - 26315923-26316024,26316173-26316267,26316737-263167... 92 9e-19
04_04_0688 - 27288308-27288366,27288475-27288595,27288888-272889... 88 1e-17
03_02_0840 + 11664382-11664516,11664629-11664737,11665579-116656... 87 2e-17
04_01_0005 + 107668-107705,107822-107876,107964-108084,109361-10... 67 3e-11
12_01_0170 + 1265642-1265776,1265872-1265980,1266116-1266228,126... 50 3e-06
11_01_0168 + 1362890-1362961,1363059-1363167,1363302-1363414,136... 50 3e-06
08_02_0324 - 15766862-15766871,15767041-15767741 32 0.81
07_03_1091 + 23899825-23900649,23900750-23900998,23901104-239011... 30 4.3
02_04_0491 + 23417790-23417859,23418550-23418773,23418951-234189... 29 7.5
>11_04_0328 +
16437947-16438091,16439953-16440062,16440446-16440514,
16440840-16440955,16441049-16441103,16441206-16441326,
16441541-16441635,16441728-16441826
Length = 269
Score = 92.7 bits (220), Expect = 5e-19
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
Frame = +2
Query: 566 IQFDSNNIEHEEKLLKLWSLLVPDETLESRISKQWQYIGFQGDDPKTDFRGMGLLGLENL 745
+ FD + +H+E L LW PD+ L+ IS+QW+ +G+QG DP TDFRG G + LENL
Sbjct: 98 VYFDPSRRDHQEALKALWHATYPDQELQGLISEQWKDMGWQGRDPSTDFRGAGFISLENL 157
Query: 746 LFFASQYPRASSHVLSHSL--HPTYGYTFAXVGINLTAMAYYLL 871
LFFA + + +L T+ Y FA G+N+T M +L
Sbjct: 158 LFFAKTFSASFQRLLKKQCGNRATWEYPFAVAGVNITFMIMQML 201
>02_05_0153 -
26315923-26316024,26316173-26316267,26316737-26316784,
26316925-26317045,26317682-26317736,26317820-26317935,
26318479-26318547,26318909-26319018,26319985-26320069
Length = 266
Score = 91.9 bits (218), Expect = 9e-19
Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
Frame = +2
Query: 566 IQFDSNNIEHEEKLLKLWSLLVPDETLESRISKQWQYIGFQGDDPKTDFRGMGLLGLENL 745
+Q+DS+N +H+E L LW P L IS+QW+ +G+QG DP TDFRG G + LENL
Sbjct: 78 VQYDSSNSDHQEALKDLWRASFPGAELRGLISEQWKEMGWQGKDPSTDFRGGGFISLENL 137
Query: 746 LFFASQYPRASSHVL--SHSLHPTYGYTFAXVGINLTAMAYYLL 871
++F+ +P++ +L + + Y FA G+N+T M +L
Sbjct: 138 VYFSKNFPKSFQELLRKQNGDRAIWEYPFAVAGVNITFMLIQML 181
>04_04_0688 -
27288308-27288366,27288475-27288595,27288888-27288942,
27289041-27289156,27289548-27289616,27289975-27290084,
27290222-27290306
Length = 204
Score = 88.2 bits (209), Expect = 1e-17
Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Frame = +2
Query: 566 IQFDSNNIEHEEKLLKLWSLLVPDETLESRISKQWQYIGFQGDDPKTDFRGMGLLGLENL 745
+ +D +N EH+E L LW + P L +S QW+ +G+QG DP TDFRG G + LENL
Sbjct: 78 VPYDGSNGEHQEALKTLWHVSFPGTELLGLVSDQWKEMGWQGKDPSTDFRGGGFISLENL 137
Query: 746 LFFASQYPRASSHVL--SHSLHPTYGYTFAXVGINLTAMAYYLLKDGCAK 889
L+FA Y ++ +L + + Y FA G+N+T M +L AK
Sbjct: 138 LYFAKNYTKSFQELLCKQNGDRALWEYPFAVAGVNITFMLIQMLDLQAAK 187
>03_02_0840 +
11664382-11664516,11664629-11664737,11665579-11665676,
11665757-11665825,11665921-11666036,11666113-11666167,
11666250-11666370,11666461-11666603,11666691-11666792
Length = 315
Score = 87.4 bits (207), Expect = 2e-17
Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
Frame = +2
Query: 566 IQFDSNNIEHEEKLLKLWSLLVPDETLESRISKQWQYIGFQGDDPKTDFRGMGLLGLENL 745
I FD + +EH++ L +LW L P+ + S+ W+ +G+QG DP TDFRG G + LENL
Sbjct: 127 IPFDGSRVEHQDALRQLWRLAYPNRDIPPLKSELWKEMGWQGTDPSTDFRGGGFISLENL 186
Query: 746 LFFASQYPRASSHVLS--HSLHPTYGYTFAXVGINLTAMAYYLL 871
+FFA YP + +L+ + Y FA GIN++ M +L
Sbjct: 187 IFFARNYPGSFQALLNKVQGQRADWEYPFAVAGINISFMLIQML 230
>04_01_0005 +
107668-107705,107822-107876,107964-108084,109361-109408,
109537-109631,109985-110086
Length = 152
Score = 66.9 bits (156), Expect = 3e-11
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Frame = +2
Query: 677 IGFQGDDPKTDFRGMGLLGLENLLFFASQYPRASSHVL--SHSLHPTYGYTFAXVGINLT 850
+G+QG +P TDFRG G +GLENLLFFA+ YP + +L + T+ Y FA G+N++
Sbjct: 1 MGWQGPNPSTDFRGCGFVGLENLLFFATTYPASYQRLLLKKQGMRATWEYPFAVAGVNVS 60
Query: 851 AMAYYLLK 874
M LL+
Sbjct: 61 YMLIQLLE 68
>12_01_0170 +
1265642-1265776,1265872-1265980,1266116-1266228,
1266814-1266882,1267042-1267157,1267428-1267461,
1267631-1267816,1267902-1268003
Length = 287
Score = 50.4 bits (115), Expect = 3e-06
Identities = 20/50 (40%), Positives = 31/50 (62%)
Frame = +2
Query: 566 IQFDSNNIEHEEKLLKLWSLLVPDETLESRISKQWQYIGFQGDDPKTDFR 715
+ FDS++++H++ L +LW L P L S W+ +G+Q DP TDFR
Sbjct: 132 VPFDSSSVKHQDALKELWRLAYPSRQLPPLKSDLWKEMGWQNSDPATDFR 181
>11_01_0168 +
1362890-1362961,1363059-1363167,1363302-1363414,
1364000-1364068,1364228-1364343,1364612-1364645,
1364812-1364997,1365083-1365184
Length = 266
Score = 50.4 bits (115), Expect = 3e-06
Identities = 20/50 (40%), Positives = 31/50 (62%)
Frame = +2
Query: 566 IQFDSNNIEHEEKLLKLWSLLVPDETLESRISKQWQYIGFQGDDPKTDFR 715
+ FDS++++H++ L +LW L P L S W+ +G+Q DP TDFR
Sbjct: 111 VPFDSSSVKHQDALKELWRLAYPSRQLPPLKSDLWKEMGWQNSDPATDFR 160
>08_02_0324 - 15766862-15766871,15767041-15767741
Length = 236
Score = 32.3 bits (70), Expect = 0.81
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = -1
Query: 501 LNGDIKALCNLGLIFFTLIIIEIDGSNKL*KLLGTNCFSKTTLSRNEITSFTSLVRDNDN 322
++G + L + G++ F L++ E DGS L + +SK R+ I F S+ +D+D+
Sbjct: 118 IHGFVYTLFDGGILAFELVVSENDGSYYLDAPIFLRAWSKIVRERSMI-CFASVGQDDDD 176
Query: 321 DFS 313
D S
Sbjct: 177 DHS 179
>07_03_1091 +
23899825-23900649,23900750-23900998,23901104-23901195,
23901413-23902193
Length = 648
Score = 29.9 bits (64), Expect = 4.3
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Frame = -1
Query: 741 FSNPSKPI--PRKSVLGSSPWNPIYC------HCFEIRDSRVSSGTSKDHNFNSFSSCSM 586
FS+ ++P P+ S+ S P P++C +C + + S G+S+ N ++ ++
Sbjct: 474 FSSHTRPTESPKLSLAESKPMTPLFCCSKPKCNCSKRSSRKASDGSSQGSNMSAAMDLAV 533
Query: 585 LLLSNC 568
L S C
Sbjct: 534 ALRSEC 539
>02_04_0491 +
23417790-23417859,23418550-23418773,23418951-23418964,
23419842-23419968,23420092-23420161,23420661-23420766,
23420849-23420966,23421457-23421576,23421679-23421859,
23421954-23422030,23422117-23422169,23422336-23422387,
23422683-23423885
Length = 804
Score = 29.1 bits (62), Expect = 7.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 249 RVVFLKNHFKIGLTYHCKTVQIL*NNIALERKNIQD*NNTKILY 118
RVV L + F++G CK + N++ +E K + N +I Y
Sbjct: 87 RVVLLLDVFEVGFALFCKASSTMGNSLPVESKVTVEEENDRIKY 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,822,950
Number of Sequences: 37544
Number of extensions: 548357
Number of successful extensions: 1259
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3794526552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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