Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_O08
         (1366 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    33   0.12 
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    29   1.5  
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.6  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    27   4.6  
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5...    27   6.0  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    27   8.0  

>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 32.7 bits (71), Expect = 0.12
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -1

Query: 631 SKPSLAMSSIVGFSGSTTMLATLSPWRRISASSPVRRSISFTPPSGSVFTSTCCRSLLTL 452
           ++P   MS IVGFSGSTT L T   +    +     ++  F PP  ++ + +   +L  L
Sbjct: 311 NRPYSPMSEIVGFSGSTTPLDT---YGNRPSGKKFNKNSKFRPPGSTISSYSSASTLRRL 367

Query: 451 CR 446
            R
Sbjct: 368 PR 369


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 279 FFTLEVFCSIFTLVFGLLGIVFGIFYAILHIHESINN 169
           FFTLE F SI  +   L   +F +  ++ H H ++++
Sbjct: 253 FFTLEKFGSITLVTITLTRKIFTMLLSVFHFHHTVSS 289


>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 399 SIRENELFKLNSLKEDLHNVKRLLQQV 479
           S+ EN+L KL +  ED+ N K+ L+++
Sbjct: 68  SLEENKLTKLKAPIEDMENTKKELEEI 94


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = -3

Query: 596 ILRLDHHVGDLVSLASNLRLQSGETLDQLHSAVRQRVHLHLLQK 465
           + RL H V DL +   NL+ Q  + +++L+S +  +  L +LQK
Sbjct: 107 VRRLSHEVNDLQTDRENLKHQFEDQIEKLNSEISNQNSL-ILQK 149


>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
           Whi5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 527 ETLDQLHSAVRQRVHLHLLQKSLN 456
           +TLDQ+ + VR+  H+H   +S+N
Sbjct: 65  QTLDQVETLVRKENHVHRRSRSIN 88


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 224 PKSPNTSVKIEQKTSNVKKSTKIKNEADKSPKKSRXQHHKVVPGAAQLPEP 376
           P+S   S       S +  S  I N+  KSP  SR +   +   A ++P P
Sbjct: 245 PQSTQFSPPANDNISKLPSSFTIVNDPLKSPSSSRLRIRNITLCADKIPRP 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,645
Number of Sequences: 5004
Number of extensions: 51152
Number of successful extensions: 238
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 753140462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)