Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_O08
(1366 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0260 - 2726204-2727370 34 0.30
05_03_0033 - 7585267-7586028 33 0.40
05_03_0035 - 7592177-7592938 33 0.69
11_06_0693 - 26334574-26336121 31 2.1
01_05_0352 + 21271835-21271928,21272029-21272087,21272453-212726... 30 3.7
01_05_0122 + 18366119-18367014,18367042-18367397,18367471-18368165 30 3.7
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 30 3.7
05_03_0184 + 9339939-9340896,9341003-9341083,9341166-9341383,934... 29 6.5
12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518 29 8.5
01_04_0124 + 16359695-16359734,16360217-16360453,16361133-163621... 29 8.5
>10_01_0260 - 2726204-2727370
Length = 388
Score = 33.9 bits (74), Expect = 0.30
Identities = 28/76 (36%), Positives = 36/76 (47%)
Frame = -3
Query: 701 LFAEHPRLHGDAGLLYLFPGEPLLEAIFSYVLYCWILRLDHHVGDLVSLASNLRLQSGET 522
L+ E P L G+A L +L G +LE F C L +DH V + L N+RL E
Sbjct: 215 LYEEPPVLVGEA-LYWLLDGSRILEFEFGNQCLCLAL-IDHPVENHAILKRNIRLVRMED 272
Query: 521 LDQLHSAVRQRVHLHL 474
D L A + LHL
Sbjct: 273 DDVLGLAFVKDFSLHL 288
>05_03_0033 - 7585267-7586028
Length = 253
Score = 33.5 bits (73), Expect = 0.40
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +2
Query: 212 PKTMPKSPNTSVKIEQKTSNVKKSTKIKNEADKSPKKSRXQHHKVVPGAAQLPEPRRRLR 391
PK+ PKS T + S + T+ K+E+ PK R + K P PE + +
Sbjct: 171 PKSEPKSEPTPQTEPKAESQPEPKTEPKSESKAEPKPERKSYSKSKPEPESKPEAKTEPQ 230
Query: 392 QEKHP 406
E P
Sbjct: 231 PESKP 235
>05_03_0035 - 7592177-7592938
Length = 253
Score = 32.7 bits (71), Expect = 0.69
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = +2
Query: 212 PKTMPKSPNTSVKIEQKTSNVKKSTKIKNEADKSPKKSRXQHHKVVPGAAQLPEPRRRLR 391
PK PKS T + S + T+ K+E+ PK R + K P PE + +
Sbjct: 171 PKYEPKSEPTPQTEPRAESQPEPKTEPKSESKAEPKPERKSYSKSKPEPESKPEAKAERQ 230
Query: 392 QEKHP 406
E P
Sbjct: 231 PESKP 235
>11_06_0693 - 26334574-26336121
Length = 515
Score = 31.1 bits (67), Expect = 2.1
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -2
Query: 651 LPRRAPSRSHL*LCPLLLDSQARPPCWRPCLPGV--ESPPPVR*DARSASLRRPAACSPP 478
LP PS H L LLL S PP P L V +PPP+ +A+++ +A SPP
Sbjct: 55 LPSSPPSPHHHSLAALLLLSSPPPPA-LPLLRLVPPHAPPPL--PLLNAAIKALSASSPP 111
Query: 477 LA 472
LA
Sbjct: 112 LA 113
>01_05_0352 +
21271835-21271928,21272029-21272087,21272453-21272641,
21273568-21273738,21274542-21274694
Length = 221
Score = 30.3 bits (65), Expect = 3.7
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Frame = +3
Query: 399 SIRENELFKLNSLKEDLHNVKRLLQQVEVNTLPDGG-VKLIERLTGLEAEIRRQGDKVAN 575
S+R L KL K DL+N+K L++V G +L+E +G+ + D+ +
Sbjct: 65 SVRAGLLAKLREYKSDLNNLKGTLKRVTTGNAQQGSREELLE--SGMAETLGVSADQKSR 122
Query: 576 M--VVEPENPTIEDIAKDGFEKGLSWEEI 656
+ + E +N T + I +D L E++
Sbjct: 123 LLRITEKQNKTTDRI-RDSHRTMLETEDL 150
>01_05_0122 + 18366119-18367014,18367042-18367397,18367471-18368165
Length = 648
Score = 30.3 bits (65), Expect = 3.7
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +3
Query: 447 LHNVKRLLQ---QVEVNTLPDGGVKLIERLTGLEAEIRRQGDKVANMVVEPENPTIEDIA 617
+H ++R Q +VE+ L DGGV L E LT A+ D + + P T+ D
Sbjct: 293 MHRLRRDAQHQVRVEIEALLDGGVDLSETLT--RAQFEELNDDLFARTMAPLRKTMADA- 349
Query: 618 KDGFEKG 638
G EKG
Sbjct: 350 --GLEKG 354
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 30.3 bits (65), Expect = 3.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 663 PSVSLPRRAPSRSHL*LCPLLLDSQARPPCWRPCLPGVESPPPV 532
PS+S P +APS SH + + PP RP LP ++P +
Sbjct: 134 PSLSPPAKAPSHSH-------AKTPSMPPAERPALPPTKAPAAI 170
>05_03_0184 +
9339939-9340896,9341003-9341083,9341166-9341383,
9341796-9342019,9342409-9343096
Length = 722
Score = 29.5 bits (63), Expect = 6.5
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 643 ESPFSKPSLAMSSIVGFSGSTTMLATLSPWRRI-SASSPVRRSISFTPPSGSV 488
ES S S S S S + +A+ SP R + S SPV R TPPS +
Sbjct: 57 ESEISPESSLSISEADKSPSHSSMASPSPSRAVESTGSPVHRGSQLTPPSTKI 109
>12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518
Length = 783
Score = 29.1 bits (62), Expect = 8.5
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -3
Query: 584 DHHVGDLVSLASNLRLQSGETLDQLHSAVRQRVHLHLLQKSLNIM 450
DH + L N+ QS E L +HS+ R LH KSLNI+
Sbjct: 549 DHRTPIPLDLRLNIATQSAEALAYIHSST-SRTILHGDVKSLNIL 592
>01_04_0124 +
16359695-16359734,16360217-16360453,16361133-16362104,
16362211-16362398,16362564-16363942,16364024-16365047,
16365171-16365566,16367484-16367999,16368085-16368226,
16369409-16369553,16371351-16371432,16371851-16371895,
16372018-16372140
Length = 1762
Score = 29.1 bits (62), Expect = 8.5
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -2
Query: 300 SFLILVDFFTLEVFCSIFTLVFGLLGIVFGIFYAILHI 187
SF +D+ L +C + +V L+ I + Y +LH+
Sbjct: 516 SFWTFLDYIRLYAYCHLLDIVLALIAITGTLEYDVLHL 553
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,478,477
Number of Sequences: 37544
Number of extensions: 390791
Number of successful extensions: 1737
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1727
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4306671240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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