Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_O08
         (1366 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical ...    30   4.4  
AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical ...    30   4.4  
AL021175-9|CAA15969.2|  444|Caenorhabditis elegans Hypothetical ...    29   5.8  
AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans hom...    29   5.8  
U28940-6|AAA68352.1|  925|Caenorhabditis elegans Hypothetical pr...    29   7.6  

>AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical
            protein Y38E10A.6b protein.
          Length = 1345

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 212  PKTMPKSPNTSVKIEQKTSNVKKSTKIKNEADKSPKKS-RXQHHKVVPGAAQLPEPRR 382
            PK   K+P    +I++     +K+ +   E +KSPKKS + Q  + +P  ++    +R
Sbjct: 938  PKKSEKAPEKPQEIQEIPKKSEKAPEKPQEIEKSPKKSEKRQEIQEIPQKSEKTSEKR 995


>AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical
            protein Y38E10A.6a protein.
          Length = 1343

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 212  PKTMPKSPNTSVKIEQKTSNVKKSTKIKNEADKSPKKS-RXQHHKVVPGAAQLPEPRR 382
            PK   K+P    +I++     +K+ +   E +KSPKKS + Q  + +P  ++    +R
Sbjct: 936  PKKSEKAPEKPQEIQEIPKKSEKAPEKPQEIEKSPKKSEKRQEIQEIPQKSEKTSEKR 993


>AL021175-9|CAA15969.2|  444|Caenorhabditis elegans Hypothetical
           protein Y6E2A.8 protein.
          Length = 444

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
 Frame = +2

Query: 227 KSPNTSVKIEQKTSNVKKSTKIKN----EADKSPKKS-RXQHHKVVPGAAQLPEPRRRLR 391
           K    S K +++  N KK  KIK+     A KS KKS + +  K      ++PE  ++ +
Sbjct: 339 KKKKESSKSKEEDKNKKKEVKIKSAPKTSAKKSAKKSAKKEQKKSEKKVKEVPEKAQKSK 398

Query: 392 QEK 400
           +EK
Sbjct: 399 KEK 401


>AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans
           homeobox protein 44,isoform a protein.
          Length = 1273

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
 Frame = +3

Query: 408 ENELFKLNSLKEDLHNVKRLLQQVEVNTLPDGGVKLIERL-TGLEAEIRRQGDKVANMVV 584
           +N+L   N   E + N  RLL+++E     +   + IERL   +E   R   +K  N  +
Sbjct: 336 KNQLESRNDY-EAIKNELRLLREIEFGDSAEANAESIERLGETVETLDRLLAEK--NRRL 392

Query: 585 EPENPTIEDIAKDGFEKGLSWEEIQKASIA 674
           + EN ++  +A DGF KG   +E+ KA ++
Sbjct: 393 QNENASLR-VANDGF-KG---DEVMKAIVS 417


>U28940-6|AAA68352.1|  925|Caenorhabditis elegans Hypothetical
           protein T24H7.2 protein.
          Length = 925

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +2

Query: 242 SVKIEQKTSNVKKSTKIKNEADKSPKKSRXQHHKVVPGAAQLPEPRRRL 388
           SVK+E  T   +  T + + +++SPK +  + +     A ++ E ++ L
Sbjct: 602 SVKVEDSTPEPEPETPVNSTSEESPKTNETEKNASSGNATEVKEKKKEL 650


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,730,683
Number of Sequences: 27780
Number of extensions: 308148
Number of successful extensions: 1614
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1605
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3850470860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)