Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_O02
(1224 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0639 - 12503525-12504289 32 0.80
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 31 2.4
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270... 30 4.3
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793... 29 5.6
10_02_0061 - 4812903-4812940,4813140-4813536 29 5.6
08_02_1098 - 24291138-24291851,24292607-24292861 29 5.6
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810... 29 7.4
04_03_0616 - 18052596-18053779,18053935-18054099,18056236-180562... 29 7.4
02_05_0040 + 25341418-25341810 29 9.8
>02_02_0639 - 12503525-12504289
Length = 254
Score = 32.3 bits (70), Expect = 0.80
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 492 LRETNESPDVLLPKNYILLSNFCVNIPVLFSPSLCAPF 605
+ E P PKNY++ C V+F PSL F
Sbjct: 71 MNELEFQPSATCPKNYVIFDQTCTKSRVMFHPSLAHKF 108
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 30.7 bits (66), Expect = 2.4
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +2
Query: 284 RMGRSGSNAPARNRRA--FEDMPPTRPDTSGRPKLVLEKRTVKEPVNSLASTSQSSSIFG 457
R GRS S +PAR+R + PP R + S P+ +R + PV + +S + S +
Sbjct: 220 RSGRSRSRSPARDRGSPPRRRSPPARRERSPAPRSRSPRR--RSPVKTTSSHRERSPVRR 277
Query: 458 GARPR 472
PR
Sbjct: 278 NGSPR 282
>06_03_1067 - 27326167-27326295,27326572-27326656,27326993-27327033,
27327274-27327333,27327843-27327962,27328842-27329114,
27329186-27329257,27329798-27329860,27329957-27330139,
27330544-27330660,27330734-27332683,27332770-27332907,
27333003-27333284,27334650-27335522
Length = 1461
Score = 29.9 bits (64), Expect = 4.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 299 PSVPCGPSHRRGAPRTRRGSSARRH 225
P P G S +RG P R GSS+ RH
Sbjct: 993 PPSPVGESRKRGFPIVRSGSSSPRH 1017
>11_06_0542 +
24777453-24777632,24777654-24778478,24778576-24779319,
24779422-24780354,24780456-24780938,24780969-24781082,
24781240-24781636,24781732-24782024,24782392-24782802
Length = 1459
Score = 29.5 bits (63), Expect = 5.6
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +2
Query: 281 GRMGRSGSNAPARNRRAFEDMPPT-RPDTSGRPKLVLEK-RTVKEPVNSLASTSQSSSIF 454
G MGRS S++P+ A PPT RP G ++V+ ++ + S+A+T S++
Sbjct: 236 GTMGRSSSSSPSLPPIAIVPPPPTPRPAQGGSTEVVVAAGANARDALASVATTHFDRSVW 295
>10_02_0061 - 4812903-4812940,4813140-4813536
Length = 144
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 353 RPDTSGRPKLVLEKRTVKEPVNSLASTSQSSSIFG 457
R SGR +VLE+ TV +LAS+S+ +S+ G
Sbjct: 97 RAAMSGREAVVLERGTVMSCARTLASSSRDNSVGG 131
>08_02_1098 - 24291138-24291851,24292607-24292861
Length = 322
Score = 29.5 bits (63), Expect = 5.6
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 432 VEASELTGSFTVRFSSTSFGLPEVSGL 352
VEA LTG +RF+ FG PE +GL
Sbjct: 46 VEADTLTGLPALRFAIVKFGHPEFAGL 72
>05_06_0276 +
26878732-26879574,26879920-26880387,26880800-26881021,
26881153-26881278,26881309-26881573,26881719-26881936
Length = 713
Score = 29.1 bits (62), Expect = 7.4
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +2
Query: 284 RMGRSGSNAPARNRRAFEDMPPTRPDTSGRPKLVLEKRTVKEPVNSLASTSQSSSIFGGA 463
R GRS S +PAR+R + PP R + S + +R + PV S +S + S +
Sbjct: 13 RSGRSRSRSPARDRGS----PPRRRERSPAARSRSPRR--RSPVKSTSSHRERSPVRRNG 66
Query: 464 RPR 472
PR
Sbjct: 67 SPR 69
>04_03_0616 -
18052596-18053779,18053935-18054099,18056236-18056260,
18057259-18057312,18057354-18057619,18058633-18059371
Length = 810
Score = 29.1 bits (62), Expect = 7.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 852 RANISYTKSPYDVIITRNLNTYGVENKRDCSW 757
+ NIS S Y+V+ LNT G+ N+ CS+
Sbjct: 123 QTNISTGLSYYEVMFDYTLNTSGIYNRTPCSY 154
>02_05_0040 + 25341418-25341810
Length = 130
Score = 28.7 bits (61), Expect = 9.8
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 314 RVRWSPSVPC-GPSHRRGAPRTRRGSSARR 228
R R +P C GP R GAPR R GSS +R
Sbjct: 94 RRRGAPRRRCSGPQLRCGAPRWRHGSSRQR 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,286,002
Number of Sequences: 37544
Number of extensions: 452711
Number of successful extensions: 1241
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3759607596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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