Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_O02
         (1224 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    26   1.9  
Y17705-1|CAA76825.1|  124|Anopheles gambiae opsin protein.             24   7.9  

>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1173

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -2

Query: 302  SPSVPCGPSHRRG--APRTRRGSSARRHDRGRP-IARYRRPQLL 180
            SPS P GPS R    A R  R ++ RR  R R   A+ + P L+
Sbjct: 1049 SPSHPVGPSDRNQVIAARRERRNARRRERRAREREAQQQNPSLV 1092


>Y17705-1|CAA76825.1|  124|Anopheles gambiae opsin protein.
          Length = 124

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -3

Query: 397 PLLQHQLRSTRSVWSGGRHIFECASVSSGCVGARASH 287
           PL+ H LR  R + +   H         GCV +R  H
Sbjct: 6   PLVHHHLRHLRVLAAAADHHLLVHLHPEGCVRSREEH 42


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 995,608
Number of Sequences: 2352
Number of extensions: 18553
Number of successful extensions: 27
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 139382727
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)