Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_O02
         (1224 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64858-8|AAB18286.3|  288|Caenorhabditis elegans Serpentine rece...    31   1.7  
AC006743-4|AAF60502.1|  291|Caenorhabditis elegans Collagen prot...    30   2.9  
U64601-4|AAB04574.1|  163|Caenorhabditis elegans Hypothetical pr...    29   8.8  
L14730-2|AAB37562.2|  187|Caenorhabditis elegans C.elegans homeo...    29   8.8  
AY647457-1|AAT67384.1|  187|Caenorhabditis elegans homeobox gene...    29   8.8  

>U64858-8|AAB18286.3|  288|Caenorhabditis elegans Serpentine receptor,
            class t protein25 protein.
          Length = 288

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 903  VFCGHNVIIFXLYKAS*LILCCICSSFINLFILLGREIN 1019
            VFC + V I+ L  A   + CC C  F+N+ +L+ R +N
Sbjct: 59   VFCTYPVFIYFLGLAGLGLWCCSC--FMNILLLVNRTMN 95


>AC006743-4|AAF60502.1|  291|Caenorhabditis elegans Collagen protein
           109 protein.
          Length = 291

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +2

Query: 281 GRMGRSGSNAPARNRRAFEDMPPTRPDTSGRPKLVLEKRTV 403
           G  GR G   P RN +      P RP T GRP +V E++ V
Sbjct: 96  GHPGRPG--LPGRNGKPGVPGAPGRPGTPGRPPIVCEEQDV 134


>U64601-4|AAB04574.1|  163|Caenorhabditis elegans Hypothetical
           protein M03F4.4 protein.
          Length = 163

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 438 SLRRYSAGLGREKKSSKNLRETNESPDVLLPKNY 539
           S +RY +G+ + KK     R+ ++SP  L+PK +
Sbjct: 20  SRKRYISGIEKHKKKRVTKRKGSDSPVDLIPKRF 53


>L14730-2|AAB37562.2|  187|Caenorhabditis elegans C.elegans homeobox
           protein 16 protein.
          Length = 187

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -2

Query: 308 RWSPSVPCGPSHRRGAPRTRRGSSARRHDRGRPIARYRRPQL 183
           R+S     GP HR+   R   GSS    +  RP   +   QL
Sbjct: 58  RYSDRPSAGPRHRKSRKRESTGSSGSSEEEKRPRTAFTGDQL 99


>AY647457-1|AAT67384.1|  187|Caenorhabditis elegans homeobox gene 16
           protein.
          Length = 187

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -2

Query: 308 RWSPSVPCGPSHRRGAPRTRRGSSARRHDRGRPIARYRRPQL 183
           R+S     GP HR+   R   GSS    +  RP   +   QL
Sbjct: 58  RYSDRPSAGPRHRKSRKRESTGSSGSSEEEKRPRTAFTGDQL 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,880,539
Number of Sequences: 27780
Number of extensions: 404631
Number of successful extensions: 1089
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3380764392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)