Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_N24
(1263 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0147 - 5923117-5923215,5923882-5924069,5924885-5924977,592... 135 6e-32
01_01_0271 + 2243496-2243500,2245011-2245061,2245174-2245322,224... 103 3e-22
04_03_0212 + 12697854-12698549,12698655-12698930,12698991-126990... 102 7e-22
01_06_1597 + 38528241-38528588,38529623-38529721,38529814-385299... 101 9e-22
05_04_0340 - 20404703-20404771,20404908-20405093,20405191-204052... 100 5e-21
04_04_0515 - 25829298-25829750,25829822-25829944,25831294-258314... 96 5e-20
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204... 29 5.9
10_01_0113 + 1410151-1411416 29 7.7
>03_02_0147 -
5923117-5923215,5923882-5924069,5924885-5924977,
5925499-5925628,5925720-5925802,5925893-5925976,
5926253-5926316,5926375-5926515,5926801-5926863,
5926968-5927006,5927126-5927185,5927567-5927624,
5927708-5928099
Length = 497
Score = 135 bits (327), Expect = 6e-32
Identities = 77/221 (34%), Positives = 119/221 (53%), Gaps = 29/221 (13%)
Frame = +3
Query: 363 FLPKGYPDSVSRDYSAYQIWDTAQAFCSTITGTLATQEVLRGVGVGDTTATPLAATVTWV 542
F+P+G+P SV+ DY +Q+WDT Q + I L+TQ +L +GVG+ +AT + AT W
Sbjct: 147 FVPEGFPGSVTPDYVPFQMWDTLQGLSTYIRAMLSTQALLGAIGVGEKSATVIGATFQWF 206
Query: 543 IKDGCGHLGRILFAFARG------------------------TCL----DAYSKKWRLYA 638
++D G LG ILF F + TCL D+ +K WRL A
Sbjct: 207 LRDLTGMLGGILFTFYQVSNSLANSNRQCHLIAIDSLFTDEITCLGSNLDSNAKMWRLVA 266
Query: 639 DILNDAAMCIEIALPYFKNYTTVVLCVSTVMKAIVGVSGGATRAAMTQHHAVRGNMADVS 818
D +ND M +++ P F + V++C+ ++ ++ GV+ GATRAA+TQH A+ N AD+S
Sbjct: 267 DFMNDLGMLMDLLSPLFPSSLIVIMCLGSLSRSFTGVASGATRAALTQHFALANNAADIS 326
Query: 819 AKDSAQETAVNLXASXTAWFIISVLGSNAF-IFVFIMMLHI 938
AK+ +QET + + V +A ++V + L I
Sbjct: 327 AKEGSQETLATMLGMGLGMLLAHVTRGHALGVWVSFLSLTI 367
>01_01_0271 +
2243496-2243500,2245011-2245061,2245174-2245322,
2245870-2245970,2246327-2246385,2246763-2246809,
2246952-2247030,2247139-2247211,2247294-2247413,
2247685-2247744,2247881-2247994,2248921-2249016,
2249094-2249333
Length = 397
Score = 103 bits (247), Expect = 3e-22
Identities = 63/190 (33%), Positives = 85/190 (44%), Gaps = 13/190 (6%)
Frame = +3
Query: 366 LPKGYPDSVSRDYSAYQIWDTAQAFCSTITGTLATQEVLRGVGVGDTTATPLAAT---VT 536
LP G+P SVS DY Y +W I TL T +L+ VGVG T T AA+ +
Sbjct: 63 LPAGFPGSVSDDYLEYMLWQLPTNVTGWICHTLVTSTLLKAVGVGSFTGTSAAASAAAIR 122
Query: 537 WVIKDGCGHLGRILFAFARGTCLDAYSKKWRLYADILNDAAMCIEIALPYFKNYTTVVLC 716
WV KDG G GR+L GT D KKWR+YAD + A E+ P + Y +
Sbjct: 123 WVSKDGIGAFGRLLIGGRFGTLFDDDPKKWRMYADFIGSAGSIFELITPLYPGYFLPLAS 182
Query: 717 VSTVMKAIV-------GVSGG---ATRAAMTQHHAVRGNMADVSAKDSAQETAVNLXASX 866
+ + K I+ V G + + H A GN+ +V+AK+ E L
Sbjct: 183 LGNLAKKIIDSGLLKQAVGRGFRDPSFRVIQNHFAESGNLGEVAAKEEVWEVGAQLLGLS 242
Query: 867 TAWFIISVLG 896
FI+ G
Sbjct: 243 IGVFIMDTSG 252
>04_03_0212 +
12697854-12698549,12698655-12698930,12698991-12699038,
12699659-12699715,12700965-12701163,12702267-12702373,
12702586-12702759,12702844-12703083,12703638-12703693,
12704499-12704622
Length = 658
Score = 102 bits (244), Expect = 7e-22
Identities = 52/110 (47%), Positives = 66/110 (60%)
Frame = +3
Query: 360 VFLPKGYPDSVSRDYSAYQIWDTAQAFCSTITGTLATQEVLRGVGVGDTTATPLAATVTW 539
+ LP GYPDSVS DY Y +W Q S I+G L+TQ +L VG+G A P AA V W
Sbjct: 195 LLLPDGYPDSVSSDYLQYSLWRGVQGIASQISGVLSTQALLYAVGLG-KGAIPTAAAVNW 253
Query: 540 VIKDGCGHLGRILFAFARGTCLDAYSKKWRLYADILNDAAMCIEIALPYF 689
V+KDG G+L +IL + G D K WRL+AD+L + A +EI P F
Sbjct: 254 VLKDGLGYLSKILLS-KFGRHFDVNPKGWRLFADLLENTAYGLEILTPVF 302
>01_06_1597 +
38528241-38528588,38529623-38529721,38529814-38529927,
38530349-38530420,38530520-38530630,38530738-38530857,
38531541-38531613,38531997-38532077,38532167-38532231,
38532383-38532484,38532571-38532744,38532873-38532938
Length = 474
Score = 101 bits (243), Expect = 9e-22
Identities = 53/166 (31%), Positives = 87/166 (52%)
Frame = +3
Query: 366 LPKGYPDSVSRDYSAYQIWDTAQAFCSTITGTLATQEVLRGVGVGDTTATPLAATVTWVI 545
+P+G+PDSV+ Y Y W + F G T+ +L VGV + TP A + W++
Sbjct: 127 VPEGFPDSVTPSYVPYMTWRALKHFFGGAMGVFTTRTLLSSVGVSQSKVTPGAIAINWIL 186
Query: 546 KDGCGHLGRILFAFARGTCLDAYSKKWRLYADILNDAAMCIEIALPYFKNYTTVVLCVST 725
KDG G +G++LFA +G D K+ R +D+L + IE+A F + + CV+
Sbjct: 187 KDGAGRVGKMLFA-RQGKKFDYDLKQLRFSSDLLLEIGAGIELATAAFPQFFLPMACVAN 245
Query: 726 VMKAIVGVSGGATRAAMTQHHAVRGNMADVSAKDSAQETAVNLXAS 863
V+K + V+ +TR + + +A N+ DV+AK + +L S
Sbjct: 246 VVKNVAAVTSTSTRTPIYKAYARGENIGDVTAKGESVGNIADLVRS 291
>05_04_0340 -
20404703-20404771,20404908-20405093,20405191-20405292,
20405400-20405464,20405551-20405631,20405983-20406055,
20406147-20406248,20406437-20406556,20406690-20406800,
20406889-20406960,20407228-20407341,20407423-20407521,
20408472-20408849
Length = 523
Score = 99.5 bits (237), Expect = 5e-21
Identities = 56/193 (29%), Positives = 94/193 (48%)
Frame = +3
Query: 366 LPKGYPDSVSRDYSAYQIWDTAQAFCSTITGTLATQEVLRGVGVGDTTATPLAATVTWVI 545
+P+G+PDSV+ Y Y W + F G T+ +L VGV + AT A + W++
Sbjct: 137 VPEGFPDSVTPSYVPYMTWRALKHFFGGAMGVFTTRTLLNSVGVAQSRATSGAVAINWIL 196
Query: 546 KDGCGHLGRILFAFARGTCLDAYSKKWRLYADILNDAAMCIEIALPYFKNYTTVVLCVST 725
KDG G +G++LFA +G D K+ R D+L + IE+A F + C++
Sbjct: 197 KDGAGRVGKMLFA-RQGKKFDYDLKQLRFSGDLLMELGAGIELATAAFPQLFLPMACIAN 255
Query: 726 VMKAIVGVSGGATRAAMTQHHAVRGNMADVSAKDSAQETAVNLXASXTAWFIISVLGSNA 905
V+K + V+ +TR + + +A N+ DV+AK + +L + + I S
Sbjct: 256 VVKNVAAVTSTSTRTPIYKAYAKGENIGDVTAKGESVGNIADLLGTGLSILISKRNPSLV 315
Query: 906 FIFVFIMMLHIAS 944
F F+ ++ S
Sbjct: 316 TSFAFLSCGYLLS 328
>04_04_0515 -
25829298-25829750,25829822-25829944,25831294-25831473,
25831687-25831784,25831914-25832007,25832090-25832149,
25832350-25832434,25832513-25832562
Length = 380
Score = 96.3 bits (229), Expect = 5e-20
Identities = 55/168 (32%), Positives = 81/168 (48%)
Frame = +3
Query: 351 FTNVFLPKGYPDSVSRDYSAYQIWDTAQAFCSTITGTLATQEVLRGVGVGDTTATPLAAT 530
F N F P GYP SV+ Y Y + Q F S + L+TQ +L G+ T A A
Sbjct: 5 FLNKFFPSGYPYSVNEGYLTYTKFRALQHFSSAMLHVLSTQSLLFAAGLRPTPAQ--ATA 62
Query: 531 VTWVIKDGCGHLGRILFAFARGTCLDAYSKKWRLYADILNDAAMCIEIALPYFKNYTTVV 710
V+W++KDG H G+++ + G +D+ K WR+ AD+L D +E+ P V
Sbjct: 63 VSWILKDGMQHAGKLICS-GMGARMDSEPKSWRILADVLYDFGTALEVISPLCPQLFLEV 121
Query: 711 LCVSTVMKAIVGVSGGATRAAMTQHHAVRGNMADVSAKDSAQETAVNL 854
K + V+ ATR + A GN++D+ AK A T N+
Sbjct: 122 AGFGNFAKGMAVVAARATRLPIYSSFAKEGNLSDLFAKGEAISTLFNV 169
>04_04_1694 -
35419278-35419565,35419744-35419861,35420404-35420490,
35420909-35420931,35421647-35421843,35421964-35422159,
35422382-35422481,35423288-35423374,35424053-35424282,
35424678-35424763,35425148-35425271,35425415-35428573,
35430014-35430019
Length = 1566
Score = 29.5 bits (63), Expect = 5.9
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +2
Query: 746 SFRWCHKSSYDATPCSKRQHGRC 814
++++C K Y+ATPCS+R G+C
Sbjct: 430 AWKFCGKKLYEATPCSQR--GKC 450
>10_01_0113 + 1410151-1411416
Length = 421
Score = 29.1 bits (62), Expect = 7.7
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -3
Query: 787 WCCVIAALVAPPETPTIAFITVLTHSTTVV*FLKYGRAISIHIAAS 650
W C +++ P+ PT+ ITV + V YG ++H+A +
Sbjct: 255 WRCRTRVVMSDPDAPTVLAITVNSRKHVGVKDGYYGNCATVHMAVA 300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,683,051
Number of Sequences: 37544
Number of extensions: 500406
Number of successful extensions: 1221
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3910923072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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