Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_N24
         (1263 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK222913-1|BAD96633.1|  468|Homo sapiens hypothetical protein FL...   210   1e-53
AK023930-1|BAB14730.1|  468|Homo sapiens protein ( Homo sapiens ...   210   1e-53
BC009308-1|AAH09308.1|  468|Homo sapiens C16orf58 protein protein.    208   4e-53
AF495911-1|AAN60443.1| 6884|Homo sapiens nesprin-2 protein.            32   3.8  
AF435011-1|AAL33548.1| 6885|Homo sapiens NUANCE protein.               32   3.8  

>AK222913-1|BAD96633.1|  468|Homo sapiens hypothetical protein
           FLJ13868 variant protein.
          Length = 468

 Score =  210 bits (512), Expect = 1e-53
 Identities = 104/197 (52%), Positives = 138/197 (70%), Gaps = 4/197 (2%)
 Frame = +3

Query: 360 VFLPKGYPDSVSRDYSAYQIWDTAQAFCSTITGTLATQEVLRGVGVGDTTATPLAATVTW 539
           VFLP+G+PDSVS DY  YQ+WD+ QAF S+++G+LATQ VL G+GVG+  AT  AAT TW
Sbjct: 76  VFLPQGFPDSVSPDYLPYQLWDSVQAFASSLSGSLATQAVLLGIGVGNAKATVSAATATW 135

Query: 540 VIKDGCGHLGRILFAFARGTCLDAYSKKWRLYADILNDAAMCIEIALPYFKNYTTVVLCV 719
           ++KD  G LGRI+FA+ +G+ LD  +K+WRL+ADILND AM +EI  P +    T+ +  
Sbjct: 136 LVKDSTGMLGRIVFAWWKGSKLDCNAKQWRLFADILNDVAMFLEIMAPVYPICFTMTVST 195

Query: 720 STVMKAIVGVSGGATRAAMTQHHAVRGNMADVSAKDSAQETAVNLXASXTAWFIISVL-- 893
           S + K IV V+GGATRAA+T H A R NMADVSAKDS+QET VNL     +  ++ ++  
Sbjct: 196 SNLAKCIVSVAGGATRAALTVHQARRNNMADVSAKDSSQETLVNLAGLLVSLLMLPLVSG 255

Query: 894 --GSNAFIFVFIMMLHI 938
             G +   F F+  LHI
Sbjct: 256 CPGFSLGCFFFLTALHI 272


>AK023930-1|BAB14730.1|  468|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13868 fis, clone THYRO1001271. ).
          Length = 468

 Score =  210 bits (512), Expect = 1e-53
 Identities = 104/197 (52%), Positives = 138/197 (70%), Gaps = 4/197 (2%)
 Frame = +3

Query: 360 VFLPKGYPDSVSRDYSAYQIWDTAQAFCSTITGTLATQEVLRGVGVGDTTATPLAATVTW 539
           VFLP+G+PDSVS DY  YQ+WD+ QAF S+++G+LATQ VL G+GVG+  AT  AAT TW
Sbjct: 76  VFLPQGFPDSVSPDYLPYQLWDSVQAFASSLSGSLATQAVLLGIGVGNAKATVSAATATW 135

Query: 540 VIKDGCGHLGRILFAFARGTCLDAYSKKWRLYADILNDAAMCIEIALPYFKNYTTVVLCV 719
           ++KD  G LGRI+FA+ +G+ LD  +K+WRL+ADILND AM +EI  P +    T+ +  
Sbjct: 136 LVKDSTGMLGRIVFAWWKGSKLDCNAKQWRLFADILNDVAMFLEIMAPVYPICFTMTVST 195

Query: 720 STVMKAIVGVSGGATRAAMTQHHAVRGNMADVSAKDSAQETAVNLXASXTAWFIISVL-- 893
           S + K IV V+GGATRAA+T H A R NMADVSAKDS+QET VNL     +  ++ ++  
Sbjct: 196 SNLAKCIVSVAGGATRAALTVHQARRNNMADVSAKDSSQETLVNLAGLLVSLLMLPLVSG 255

Query: 894 --GSNAFIFVFIMMLHI 938
             G +   F F+  LHI
Sbjct: 256 CPGFSLGCFFFLTALHI 272


>BC009308-1|AAH09308.1|  468|Homo sapiens C16orf58 protein protein.
          Length = 468

 Score =  208 bits (507), Expect = 4e-53
 Identities = 104/197 (52%), Positives = 137/197 (69%), Gaps = 4/197 (2%)
 Frame = +3

Query: 360 VFLPKGYPDSVSRDYSAYQIWDTAQAFCSTITGTLATQEVLRGVGVGDTTATPLAATVTW 539
           VFLP+G+PDSVS DY  YQ+WD+ QAF S+++G+LATQ VL G+GVG+  AT  AAT TW
Sbjct: 76  VFLPQGFPDSVSPDYLPYQLWDSVQAFASSLSGSLATQAVLLGIGVGNAKATVSAATATW 135

Query: 540 VIKDGCGHLGRILFAFARGTCLDAYSKKWRLYADILNDAAMCIEIALPYFKNYTTVVLCV 719
           ++KD  G LGRI+FA+ +G+ LD  +K+WRL+ADILND AM +EI  P      T+ +  
Sbjct: 136 LVKDSTGMLGRIVFAWWKGSKLDCNAKQWRLFADILNDVAMFLEIMAPVCPICFTMTVST 195

Query: 720 STVMKAIVGVSGGATRAAMTQHHAVRGNMADVSAKDSAQETAVNLXASXTAWFIISVL-- 893
           S + K IV V+GGATRAA+T H A R NMADVSAKDS+QET VNL     +  ++ ++  
Sbjct: 196 SNLAKCIVSVAGGATRAALTVHQARRNNMADVSAKDSSQETLVNLAGLLVSLLMLPLVSG 255

Query: 894 --GSNAFIFVFIMMLHI 938
             G +   F F+  LHI
Sbjct: 256 CPGFSLGCFFFLTALHI 272


>AF495911-1|AAN60443.1| 6884|Homo sapiens nesprin-2 protein.
          Length = 6884

 Score = 32.3 bits (70), Expect = 3.8
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +2

Query: 596  NVFGCVQQKMEALRRHFK*RSDVY*NCSSILQKLHYSRTVCEHCYEGNCW 745
            N  GC+  ++  L++ ++  SD++    S+LQ  H+S+ + + C   N W
Sbjct: 1801 NQIGCLTPELSELKKQYESVSDLFNTKKSVLQD-HFSKLLNDQCKNFNDW 1849


>AF435011-1|AAL33548.1| 6885|Homo sapiens NUANCE protein.
          Length = 6885

 Score = 32.3 bits (70), Expect = 3.8
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +2

Query: 596  NVFGCVQQKMEALRRHFK*RSDVY*NCSSILQKLHYSRTVCEHCYEGNCW 745
            N  GC+  ++  L++ ++  SD++    S+LQ  H+S+ + + C   N W
Sbjct: 1802 NQIGCLTPELSELKKQYESVSDLFNTKKSVLQD-HFSKLLNDQCKNFNDW 1850


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,274,949
Number of Sequences: 237096
Number of extensions: 2894739
Number of successful extensions: 5328
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5328
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 18055163440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)