Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_N24
         (1263 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045642-11|AAC02584.1|  443|Caenorhabditis elegans Hypothetical...    33   0.32 
AL110499-3|CAE18038.1|  437|Caenorhabditis elegans Hypothetical ...    29   5.3  

>AF045642-11|AAC02584.1|  443|Caenorhabditis elegans Hypothetical
           protein C17H12.5 protein.
          Length = 443

 Score = 33.5 bits (73), Expect = 0.32
 Identities = 34/144 (23%), Positives = 58/144 (40%)
 Frame = +3

Query: 327 KINYFRNWFTNVFLPKGYPDSVSRDYSAYQIWDTAQAFCSTITGTLATQEVLRGVGVGDT 506
           K++  R  +T   LP G+ +SV  +   +  W+ +         T +  +V+  V     
Sbjct: 283 KMDEERTRYTIEVLPNGFSNSVMMNVYVHTGWEASGVPVRYANTTRSVVDVMNFVKTSSG 342

Query: 507 TATPLAATVTWVIKDGCGHLGRILFAFARGTCLDAYSKKWRLYADILNDAAMCIEIALPY 686
           T   L      V K+GCG  G  L   A   CL+  S+  R+  +I+         A+  
Sbjct: 343 TEKMLV-----VSKNGCGRAGFFLSLGAAFCCLNDNSEP-RI-GEIVKAIRSQRPNAVDS 395

Query: 687 FKNYTTVVLCVSTVMKAIVGVSGG 758
            K Y ++ LC    +K  + +  G
Sbjct: 396 IKQYASIYLCFVYYIKKKITIPEG 419


>AL110499-3|CAE18038.1|  437|Caenorhabditis elegans Hypothetical
           protein Y62F5A.10 protein.
          Length = 437

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 33/144 (22%), Positives = 60/144 (41%)
 Frame = +3

Query: 327 KINYFRNWFTNVFLPKGYPDSVSRDYSAYQIWDTAQAFCSTITGTLATQEVLRGVGVGDT 506
           K++  R+ +T   LP G+ +SV  +   +  W+           T +  +V+  V   + 
Sbjct: 277 KMDEERSRYTIEVLPNGFSNSVMMNVYVHTGWEPFGVPIRYANTTRSVVDVMNFVKSSNG 336

Query: 507 TATPLAATVTWVIKDGCGHLGRILFAFARGTCLDAYSKKWRLYADILNDAAMCIEIALPY 686
           +   L      V K+GCG  G  +   A   CL+  S+  R+  +I+         A+  
Sbjct: 337 SEKLLV-----VSKNGCGRAGFFITLGAAFCCLNDNSEP-RI-GEIVKAIRSQRPNAVES 389

Query: 687 FKNYTTVVLCVSTVMKAIVGVSGG 758
            K Y ++ LC+   +K  + V  G
Sbjct: 390 IKQYASLYLCLLYYIKKKITVPEG 413


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,625,336
Number of Sequences: 27780
Number of extensions: 465241
Number of successful extensions: 1325
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1323
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3516412346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)