Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_N23
(1274 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 31 0.45
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 30 0.79
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch... 28 3.2
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 4.2
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 27 5.5
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 27 7.3
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 27 7.3
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit... 26 9.7
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 30.7 bits (66), Expect = 0.45
Identities = 23/80 (28%), Positives = 33/80 (41%)
Frame = +1
Query: 400 GLPRGVIESLQKVASHDGLLTFDRFCTGLKICLLRNQVDNTTSKVDQHEADIKNSDLVMA 579
GL IE++ VA H D CT + I LL Q+ K HE N D M
Sbjct: 763 GLEEQAIEAIYAVAKHP-----DELCTNI-ILLLTKQL----FKPSNHENTTSNDDHAMD 812
Query: 580 INTQSQPSSTNLLEDDEVNL 639
+ P L +++E+ +
Sbjct: 813 EDLDDSPEEETLKDEEEIGI 832
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 29.9 bits (64), Expect = 0.79
Identities = 23/78 (29%), Positives = 33/78 (42%)
Frame = +1
Query: 502 RNQVDNTTSKVDQHEADIKNSDLVMAINTQSQPSSTNLLEDDEVNLHRSWNVMKNAETMS 681
R Q D T + H N D + +NT + LLED + L + AET+
Sbjct: 6 RGQTD-TALDISSHAKT--NGDFIKKMNT-TDSKRLKLLEDLKGKLEVECKIRDGAETLL 61
Query: 682 QYKDSNSMVQLLTRKETI 735
Q D+N + RKE +
Sbjct: 62 QVFDTNFKKETKERKEML 79
>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 234
Score = 27.9 bits (59), Expect = 3.2
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 499 LRNQVDNTTSKVDQHEADIKNSDLVMAINTQSQPSSTNL 615
+RNQ+ SKVDQ + +I ++ VM ++ P S +L
Sbjct: 188 MRNQISLLYSKVDQVKTEIASAQAVMHDLLRTYPGSESL 226
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.5 bits (58), Expect = 4.2
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = -2
Query: 652 SNFYVS*PHRLLINLSKKAVIEYLLPLLNQSFLCLLH-ADPLY*LYCRLDYVEGKFLNPY 476
S+F S RLL++ SKK V+ + + + C+++ + P+ + ++ Y + LNP
Sbjct: 418 SDFLKSTLFRLLLDASKKTVVVH---IGSSKDTCVVNFSTPITNFFSKI-YKDNPSLNPP 473
Query: 475 KTCRMLIVH-HEKQLFVNFQLHLE 407
+ +VH +EK N +L+++
Sbjct: 474 SWHLITLVHRNEKSSLPNLELYID 497
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 27.1 bits (57), Expect = 5.5
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = +1
Query: 322 DIMDDKHTGYVKLTDIENRWRDDRTKGLP----RGVIESLQKVASHDGLLTFDRFCTGLK 489
D M G +KL +W + +P R IESLQ++ S + L + FCT K
Sbjct: 374 DHMSSLILGSLKLAHAIMKWLVSDVEHIPDERLRECIESLQEIDSKEENLMTEIFCTAFK 433
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.6 bits (56), Expect = 7.3
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +1
Query: 682 QYKDSNSMVQLLTRKETIIQDSRHHAPNG--KHDHVLRPFGPPKPP 813
+Y SN M Q L+++ I + P K H P GPP PP
Sbjct: 185 RYTPSNQMGQALSKQRIIKMVTAEQDPMEPPKFRHKKVPRGPPSPP 230
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 26.6 bits (56), Expect = 7.3
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +1
Query: 280 SLPKQFVAAMRTLFDIMDDKHTGYVKLTDIENRWRDDRTKGLPRGVIESLQKVA--SHDG 453
++P Q + + LF +D H GYV ++ + + + LP V+ + ++ + +G
Sbjct: 254 AIPSQDLTSFCQLFSNVDKAHKGYVSGSEAYSFFLASK---LPEDVLAQIWDLSDTNSNG 310
Query: 454 LLTFDRFCTGLKICLLR 504
L FC L + L+
Sbjct: 311 KLNIGEFCISLYLIKLK 327
>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +1
Query: 715 LTRKET--IIQDSRHHAPNGKHDHVLRPFGPPKPPRIQ 822
LT+KE I + +R A K D L PP+PP+++
Sbjct: 297 LTKKEQKKIRRQTRAEARKEKQDRQLLGIEPPEPPKVK 334
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,926,589
Number of Sequences: 5004
Number of extensions: 76518
Number of successful extensions: 173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 693525122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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