Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_N23
         (1274 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1242 - 32016553-32016857,32017628-32017784,32017871-320180...    32   0.84 
11_06_0541 + 24771145-24775479                                         30   3.4  
03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946           29   5.9  
01_05_0252 - 19959347-19959541,19960307-19960402,19961028-199611...    29   5.9  

>04_04_1242 -
           32016553-32016857,32017628-32017784,32017871-32018089,
           32018184-32018470,32018629-32019934,32020021-32020178,
           32020250-32020335,32023106-32023173,32023297-32023340,
           32023418-32023490,32023605-32023684,32023774-32023867,
           32023981-32024151,32024463-32024557,32025049-32025128,
           32025137-32025333,32025896-32026183
          Length = 1235

 Score = 32.3 bits (70), Expect = 0.84
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 415 VIESLQKVASHDGLLTFDRFCTGLKICLLRNQVD 516
           + E+L    S  GL  F RF TG+ +CL R  VD
Sbjct: 297 ITEALCPALSEPGLRAFLRFMTGVSVCLNRGDVD 330


>11_06_0541 + 24771145-24775479
          Length = 1444

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
 Frame = +1

Query: 346  GYVKLTDIENRWRDDRTKGLPRGVIESLQKVASHDGLLTFDRFCTGLKIC---LLRN-QV 513
            G+ K+ +    + D  T  L + ++ S   + SH G+ +  +F      C   LL + + 
Sbjct: 1219 GFSKIFETNITFEDGATPKLEKIILNSFANIMSHPGVSSLPKFKELELKCNKPLLSSFEN 1278

Query: 514  DNTTSKVDQHEADIKNSDL 570
             N  SKV  H   +KN+DL
Sbjct: 1279 ANKISKVTLHSTLLKNADL 1297


>03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946
          Length = 447

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +1

Query: 754 HAPNGKHDHVLRPFGPPKPPRIQNQXADRKDTXRSYKSEIENEF 885
           H P G    V  P  PP PP+ Q     + D  R + +E +  F
Sbjct: 120 HLPRGAGHEVWPPHHPPPPPQQQQLQLAQHDAKRKHLAEHDEGF 163


>01_05_0252 -
           19959347-19959541,19960307-19960402,19961028-19961132,
           19961220-19961439,19961515-19961584,19961659-19962181,
           19962621-19962672,19963644-19963867,19963955-19964022,
           19965005-19965231,19965747-19965864,19965938-19966058
          Length = 672

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +1

Query: 553 IKNSDLVMAINTQSQPSSTNLLEDDEVNLHRS---WNVMKNAETMSQYKDS 696
           I + DL  A+  Q +   T L  DDE  +  S   W+VM N + +S  KD+
Sbjct: 581 IGDDDLKPAVTAQPEVIETILSPDDEFLVMASDGLWDVMSNEDVLSIIKDT 631


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,611,610
Number of Sequences: 37544
Number of extensions: 426322
Number of successful extensions: 876
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3957481680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)