Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_N22
         (1242 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    29   1.0  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    29   1.3  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    28   3.1  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   4.1  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   4.1  
SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|c...    26   9.4  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +1

Query: 151  IKMTRQNECXQFCNPESLISSTIILIDFNKF--DLINFVNPTSFPSISAWTKFIRTFTI* 324
            +++  ++    F  P   ++  + +++ + F   +I+F++ T FPS S W ++  + T  
Sbjct: 1885 VEIPNESRSSAFIFPSYELAEGLTMMESSSFMDSIISFIDSTCFPSSSRWFQYAPSSTAC 1944

Query: 325  SHVYCF 342
                CF
Sbjct: 1945 QMFDCF 1950


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -2

Query: 980 NXXPHFIXNNIVSSRHTSNNWFQSSNL*LSIYS 882
           N  P  + ++I SSRHT++N F S++   S++S
Sbjct: 245 NANPSTLFSSIPSSRHTTSNHFPSNSAQSSLFS 277


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 949 LSVRDIQVIIGFSRLIYNYLYILFVNL 869
           L++ ++   +GF + +YN  Y LF NL
Sbjct: 107 LAIHELSHNLGFKKTLYNRAYCLFANL 133


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 393 QRVTEIKIYSNVDNNQMETINVRLNRKSTYKF 298
           +++  + ++  + ++  ETINV   +K TYKF
Sbjct: 318 KKIVPVDVWDAMIDSLYETINVEETKKETYKF 349


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +1

Query: 259 VNPTSFPSISAWTKFIRTFTI 321
           +NPTSFPS+++ TK I + T+
Sbjct: 400 INPTSFPSLTSSTKKIPSTTL 420


>SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 186

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 531 LRQSSVAFKGAKQLIQKNIHFNLVY 605
           LR  +  +KGA+ L +KNIH N VY
Sbjct: 15  LRPLNPVYKGAEHLCRKNIH-NQVY 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,206,325
Number of Sequences: 5004
Number of extensions: 57191
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 675349698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)