Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_N22
         (1242 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            25   3.5  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            25   4.6  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 195  GIINIIYD-YFNRF**IRFN*LR*SNFVSFDFRVDKIYTYFYDLISRL 335
            GI  IIYD  FNR   I  +  R   F  +D R  ++Y Y YD   RL
Sbjct: 2480 GIERIIYDPLFNRPSKIMLSDGRYLEF-EYDVRGYRLYKYVYDSAGRL 2526


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 195  GIINIIYD-YFNRF**IRFN*LR*SNFVSFDFRVDKIYTYFYDLISRL 335
            GI  I+YD  FNR   I  +  R   F  +D R  ++Y Y YD   RL
Sbjct: 2481 GIERIVYDPLFNRPSKIMLSDGRYLEF-EYDVRGYRLYKYVYDSAGRL 2527


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 788,900
Number of Sequences: 2352
Number of extensions: 14329
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 141835209
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)