Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_N22
         (1242 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006624-6|AAN84836.1|  355|Caenorhabditis elegans Hypothetical ...    30   3.0  
AC006624-5|AAK68265.1|  418|Caenorhabditis elegans Hypothetical ...    30   3.0  
AC006624-4|AAK68264.1|  420|Caenorhabditis elegans Hypothetical ...    30   3.0  

>AC006624-6|AAN84836.1|  355|Caenorhabditis elegans Hypothetical
           protein C53D5.1c protein.
          Length = 355

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -2

Query: 602 DKVKVYIFLYQLFCALERNA*LTQLTPSRIGTCRSLYQSKLIKTIKI 462
           D+  ++  L Q    L R   LT++TP  IGTC  +YQ++ +   K+
Sbjct: 156 DRRSLWALLKQPEFILFRVLPLTRVTPKLIGTCGHMYQTESLVAFKM 202


>AC006624-5|AAK68265.1|  418|Caenorhabditis elegans Hypothetical
           protein C53D5.1b protein.
          Length = 418

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -2

Query: 602 DKVKVYIFLYQLFCALERNA*LTQLTPSRIGTCRSLYQSKLIKTIKI 462
           D+  ++  L Q    L R   LT++TP  IGTC  +YQ++ +   K+
Sbjct: 219 DRRSLWALLKQPEFILFRVLPLTRVTPKLIGTCGHMYQTESLVAFKM 265


>AC006624-4|AAK68264.1|  420|Caenorhabditis elegans Hypothetical
           protein C53D5.1a protein.
          Length = 420

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -2

Query: 602 DKVKVYIFLYQLFCALERNA*LTQLTPSRIGTCRSLYQSKLIKTIKI 462
           D+  ++  L Q    L R   LT++TP  IGTC  +YQ++ +   K+
Sbjct: 221 DRRSLWALLKQPEFILFRVLPLTRVTPKLIGTCGHMYQTESLVAFKM 267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,461,624
Number of Sequences: 27780
Number of extensions: 306409
Number of successful extensions: 591
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3443371140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)