Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_N21
(1268 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 84 3e-17
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 31 0.34
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 29 1.0
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 29 1.4
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 28 3.2
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 28 3.2
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 3.2
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 27 5.5
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz... 26 9.6
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 84.2 bits (199), Expect = 3e-17
Identities = 35/91 (38%), Positives = 56/91 (61%)
Frame = +2
Query: 200 MEGVLWKWTNYWNGWQTRWFVLENGILSYYKSQDEVVQGCKGSVKVSVCQINVNTIDNTR 379
M G L KWTNY +G++ RWF L NG+LSYYK+QD+ C+GS+ + + ++ + T
Sbjct: 257 MSGYLKKWTNYKSGYKLRWFTLNNGVLSYYKNQDDASSACRGSINLKLARLVHDPKQPTV 316
Query: 380 LDLVIPGQQHMYLRAPSPQDRQKWLVALGSA 472
++ G ++A SP + +KW+ A+ SA
Sbjct: 317 FQVIGKGSVRYSVKANSPVEAKKWIAAISSA 347
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 31.1 bits (67), Expect = 0.34
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +2
Query: 242 WQTRWFVLENGILSYYKSQDEVVQGCKGSVKVSVCQINVNTIDNTR--LDLVIPGQQHMY 415
W W V+ENG L Y + + V+ S+ + + R ++V P + +Y
Sbjct: 553 WHKHWIVVENGSLWEYANWKDSVKSNVSSISLKHASADKVRKQGRRFCFEVVTPKLKRLY 612
Query: 416 LRAPSPQDRQKWLVALGSA 472
+A S ++ W+ A+ A
Sbjct: 613 -QATSAEEMDSWIEAICEA 630
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 767 IITKNNSSNKMPRQSLSRTLSQEN 838
+ TKN+SSNK R SLS+ LS N
Sbjct: 306 VSTKNSSSNKNLRSSLSKLLSTSN 329
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -1
Query: 899 ITIGIIVFFVCFTSLPKIFIYSL--VIKFYLVIV*AFYLKSC 780
ITIG+++F CF+ + +F S + F L+ V + Y+ +C
Sbjct: 553 ITIGLVMFCKCFSEMSPLFACSTYSALAFILLQVISSYVTNC 594
>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 27.9 bits (59), Expect = 3.2
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +2
Query: 254 WFVLENGILSYYKSQDEVVQGCKGSVKVSVCQINVNTIDNTRLDLVIPGQQHMYL 418
W V I Q + K K++V Q+N+N DN+ L P + + +L
Sbjct: 77 WTVDNVNIADIQSLQSTIHSTLKNFQKINVLQLNINASDNSLAYLSKPEESYNFL 131
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +2
Query: 206 GVLWKWTNYWNGWQTRWFVLENGILSYYKSQDE 304
G + K ++ + W++R+FVL+ LSYY S ++
Sbjct: 703 GWMRKRSDRYGVWKSRYFVLKGTRLSYYHSLND 735
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 212 LWKWTNYWNGWQTRWFVLENGILSYYKSQDEVV 310
L+ +TN + WQT L N L YY + D+++
Sbjct: 317 LYNYTNGSSVWQTHMEGLMNKALDYYFTSDKII 349
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 221 WTNYWNGWQTRWFVLENGILSYYKSQDE 304
WT WN + R + N LSYY Q E
Sbjct: 212 WTRAWNAIRNRAWDALNSDLSYYGMQQE 239
>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 499
Score = 26.2 bits (55), Expect = 9.6
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 275 ILSYYKSQDEVVQGCKGSVKVSVCQINVNTIDNTRLDLV-IPGQQHMYLRAPSP 433
+++ Y + DE CK K + C+I+++T + +R V + Q + APSP
Sbjct: 156 LMNSYDTNDET---CKVLRKYAGCKIDISTFEQSRYPRVFVDSQLPVPKAAPSP 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,158,314
Number of Sequences: 5004
Number of extensions: 84355
Number of successful extensions: 226
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 689550766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -