Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_N21
(1268 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117202-14|CAB57894.2| 766|Caenorhabditis elegans Hypothetical... 72 8e-13
Z79754-5|CAB02094.2| 573|Caenorhabditis elegans Hypothetical pr... 66 5e-11
AF000195-7|AAC24270.1| 676|Caenorhabditis elegans Oxysterol bin... 62 6e-10
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p... 31 1.3
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p... 31 1.3
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin... 31 1.3
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr... 31 1.3
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr... 31 1.3
Z81044-9|CAB02812.2| 677|Caenorhabditis elegans Hypothetical pr... 30 4.0
Z81041-9|CAJ55253.1| 824|Caenorhabditis elegans Hypothetical pr... 30 4.0
Z81041-8|CAB02784.1| 829|Caenorhabditis elegans Hypothetical pr... 30 4.0
Z67754-3|CAE17693.1| 130|Caenorhabditis elegans Hypothetical pr... 30 4.0
AL110485-13|CAB60361.2| 314|Caenorhabditis elegans Hypothetical... 30 4.0
AJ306734-1|CAC37332.1| 314|Caenorhabditis elegans spermidine sy... 30 4.0
Z68004-9|CAA91985.2| 120|Caenorhabditis elegans Hypothetical pr... 29 9.3
U41036-1|AAA82384.1| 315|Caenorhabditis elegans Hypothetical pr... 29 9.3
>AL117202-14|CAB57894.2| 766|Caenorhabditis elegans Hypothetical
protein Y47D3A.17a protein.
Length = 766
Score = 72.1 bits (169), Expect = 8e-13
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 18/192 (9%)
Frame = +2
Query: 206 GVLWKWTNYWNGWQTRWFVLE-NGILSYYKSQDEVVQGCKGSVKVSVCQINVNTIDNTRL 382
G L KWTNY G++ RWFVL+ N LSYY++ EV C+GS+ + +++ D T
Sbjct: 65 GWLNKWTNYLKGYRQRWFVLDSNATLSYYRNPSEVGHTCRGSINLQEARVHT---DKTTS 121
Query: 383 DLVIPGQ-QHMYLRAPSPQDRQKWLVAL----------GSAKACVDAQDIK------GII 511
+VI GQ Q +++ + DRQ+W +L ++ DAQ K +
Sbjct: 122 CIVISGQSQTFHVKPQNEMDRQQWTNSLEYMRHKAITRAESEEDEDAQMAKTDSNRSDAL 181
Query: 512 FEDTNTLSHKKSELRLYCDLMMQQVHAVKSAANADTGPELQTINDATSLLTATCDTFIRT 691
+S K +LR ++M +Q + A N + ++ + LL T ++
Sbjct: 182 ILANRQMSGKLCDLRTAANMMNKQGDELMRALNGTVETDKNSLAERADLLKMTTSAVLQA 241
Query: 692 LEDIMKLAPPGA 727
E+ ++L+ A
Sbjct: 242 AEEFVELSEQSA 253
>Z79754-5|CAB02094.2| 573|Caenorhabditis elegans Hypothetical
protein F25H2.6 protein.
Length = 573
Score = 66.1 bits (154), Expect = 5e-11
Identities = 30/83 (36%), Positives = 44/83 (53%)
Frame = +2
Query: 206 GVLWKWTNYWNGWQTRWFVLENGILSYYKSQDEVVQGCKGSVKVSVCQINVNTIDNTRLD 385
GV+ KWTNY NGWQ R+F + G L YY S+ E GC+GS+ + I + D
Sbjct: 11 GVMKKWTNYVNGWQDRYFEITEGNLVYYLSKAEKSHGCRGSIFLKSAIIAAHEFDENEFS 70
Query: 386 LVIPGQQHMYLRAPSPQDRQKWL 454
+ + YL+A + Q + W+
Sbjct: 71 ISMGENVVWYLKAENSQSKLLWM 93
>AF000195-7|AAC24270.1| 676|Caenorhabditis elegans Oxysterol
binding protein (osbp)related protein 4, isoform a
protein.
Length = 676
Score = 62.5 bits (145), Expect = 6e-10
Identities = 26/86 (30%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = +2
Query: 200 MEGVLWKWTNYWNGWQTRWFVLENGILSYYKSQDEVVQG-CKGSVKVSVCQINVNTIDNT 376
MEG L KWTN +GWQ RWF +EN L YY S++++++G +G ++++ + ++ +N+
Sbjct: 1 MEGPLSKWTNMVHGWQYRWFKIENDTLLYYTSREKMLKGQQRGQIRLTGAVVGIDGENNS 60
Query: 377 RLDLVIPGQQHMYLRAPSPQDRQKWL 454
+ + G+ +++ ++R +W+
Sbjct: 61 LFTITVEGKT-FHMQGRDLRERNQWV 85
>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
protein 70, isoform a protein.
Length = 2257
Score = 31.5 bits (68), Expect = 1.3
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Frame = +2
Query: 242 WQTRWFVLENGILSYYKS---QDEVVQGCKGSVKVSVCQINVNTIDNTR---LDLVIP-G 400
W+ + VL LS+YK +DE V G + + + C +NV + + L L +P G
Sbjct: 2142 WEKLYAVLRQNELSFYKDPKHRDESVHG-EPPMALPGCSVNVASDYQKKKNVLSLRLPIG 2200
Query: 401 QQHMYLRAPSPQDRQKWLVAL 463
++++ + S +D Q+WL L
Sbjct: 2201 AEYLF-QCGSEEDMQRWLTEL 2220
>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
protein 70, isoform b protein.
Length = 2302
Score = 31.5 bits (68), Expect = 1.3
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Frame = +2
Query: 242 WQTRWFVLENGILSYYKS---QDEVVQGCKGSVKVSVCQINVNTIDNTR---LDLVIP-G 400
W+ + VL LS+YK +DE V G + + + C +NV + + L L +P G
Sbjct: 2187 WEKLYAVLRQNELSFYKDPKHRDESVHG-EPPMALPGCSVNVASDYQKKKNVLSLRLPIG 2245
Query: 401 QQHMYLRAPSPQDRQKWLVAL 463
++++ + S +D Q+WL L
Sbjct: 2246 AEYLF-QCGSEEDMQRWLTEL 2265
>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
protein.
Length = 2257
Score = 31.5 bits (68), Expect = 1.3
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Frame = +2
Query: 242 WQTRWFVLENGILSYYKS---QDEVVQGCKGSVKVSVCQINVNTIDNTR---LDLVIP-G 400
W+ + VL LS+YK +DE V G + + + C +NV + + L L +P G
Sbjct: 2142 WEKLYAVLRQNELSFYKDPKHRDESVHG-EPPMALPGCSVNVASDYQKKKNVLSLRLPIG 2200
Query: 401 QQHMYLRAPSPQDRQKWLVAL 463
++++ + S +D Q+WL L
Sbjct: 2201 AEYLF-QCGSEEDMQRWLTEL 2220
>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2257
Score = 31.5 bits (68), Expect = 1.3
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Frame = +2
Query: 242 WQTRWFVLENGILSYYKS---QDEVVQGCKGSVKVSVCQINVNTIDNTR---LDLVIP-G 400
W+ + VL LS+YK +DE V G + + + C +NV + + L L +P G
Sbjct: 2142 WEKLYAVLRQNELSFYKDPKHRDESVHG-EPPMALPGCSVNVASDYQKKKNVLSLRLPIG 2200
Query: 401 QQHMYLRAPSPQDRQKWLVAL 463
++++ + S +D Q+WL L
Sbjct: 2201 AEYLF-QCGSEEDMQRWLTEL 2220
>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2302
Score = 31.5 bits (68), Expect = 1.3
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Frame = +2
Query: 242 WQTRWFVLENGILSYYKS---QDEVVQGCKGSVKVSVCQINVNTIDNTR---LDLVIP-G 400
W+ + VL LS+YK +DE V G + + + C +NV + + L L +P G
Sbjct: 2187 WEKLYAVLRQNELSFYKDPKHRDESVHG-EPPMALPGCSVNVASDYQKKKNVLSLRLPIG 2245
Query: 401 QQHMYLRAPSPQDRQKWLVAL 463
++++ + S +D Q+WL L
Sbjct: 2246 AEYLF-QCGSEEDMQRWLTEL 2265
>Z81044-9|CAB02812.2| 677|Caenorhabditis elegans Hypothetical
protein C30H6.6 protein.
Length = 677
Score = 29.9 bits (64), Expect = 4.0
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 563 CDLMMQQVHAVKSAANADTGPELQTINDATSLLTATCDTFIR-TLEDIMK 709
C L Q + A + P++ +++ATS L AT D IR TL++++K
Sbjct: 551 CKLSGGQKQRIAIARALISKPKIMILDEATSALDATSDYLIRMTLDNLLK 600
>Z81041-9|CAJ55253.1| 824|Caenorhabditis elegans Hypothetical
protein C27A7.1b protein.
Length = 824
Score = 29.9 bits (64), Expect = 4.0
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Frame = +2
Query: 569 LMMQQVHAVKS-AANADTGPELQTINDATSLLTATCDTFIRTLEDIMKLA--PPGAPPTT 739
L++ Q+ A S A NA + ++Q + + T L+ + TLE + + P G PTT
Sbjct: 67 LLLTQLKAANSNAQNAMSSSKVQ-LEELTRKLSQPLEQLGPTLERLSNMPGFPMGPSPTT 125
Query: 740 PYEMPIPNL--IITKNNSSNKMPRQS 811
+P + I+T N++ + PR+S
Sbjct: 126 QTPPGVPPISPIVTGPNTTPESPRRS 151
>Z81041-8|CAB02784.1| 829|Caenorhabditis elegans Hypothetical
protein C27A7.1a protein.
Length = 829
Score = 29.9 bits (64), Expect = 4.0
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Frame = +2
Query: 569 LMMQQVHAVKS-AANADTGPELQTINDATSLLTATCDTFIRTLEDIMKLA--PPGAPPTT 739
L++ Q+ A S A NA + ++Q + + T L+ + TLE + + P G PTT
Sbjct: 72 LLLTQLKAANSNAQNAMSSSKVQ-LEELTRKLSQPLEQLGPTLERLSNMPGFPMGPSPTT 130
Query: 740 PYEMPIPNL--IITKNNSSNKMPRQS 811
+P + I+T N++ + PR+S
Sbjct: 131 QTPPGVPPISPIVTGPNTTPESPRRS 156
>Z67754-3|CAE17693.1| 130|Caenorhabditis elegans Hypothetical
protein C34E11.4 protein.
Length = 130
Score = 29.9 bits (64), Expect = 4.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = -1
Query: 338 ILSLILYIPELLHLVIYNKKVYHSLTQTILSAIRSNNLSISIKL 207
++ LI+ + +++ IY+ ++ + I SA SNN S+ +KL
Sbjct: 3 LILLIISLTQVISKPIYSNEIVENQMSAIKSAAESNNFSLLLKL 46
>AL110485-13|CAB60361.2| 314|Caenorhabditis elegans Hypothetical
protein Y46G5A.19 protein.
Length = 314
Score = 29.9 bits (64), Expect = 4.0
Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Frame = -1
Query: 332 SLILYIPELLHLVIYNKKVYHSLT--QTILSAIRSNNLSISI 213
S+ L++P + HLV +N+K++ ++T Q+I+S S ++ I
Sbjct: 224 SVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLI 265
>AJ306734-1|CAC37332.1| 314|Caenorhabditis elegans spermidine
synthase protein.
Length = 314
Score = 29.9 bits (64), Expect = 4.0
Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Frame = -1
Query: 332 SLILYIPELLHLVIYNKKVYHSLT--QTILSAIRSNNLSISI 213
S+ L++P + HLV +N+K++ ++T Q+I+S S ++ I
Sbjct: 224 SVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLI 265
>Z68004-9|CAA91985.2| 120|Caenorhabditis elegans Hypothetical
protein F47B10.5 protein.
Length = 120
Score = 28.7 bits (61), Expect = 9.3
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -1
Query: 875 FVCFTSLPKIFIYSLVIKFYLVIV*AFYLKSCFL 774
FVC PK ++ ++I F++V++ L +C++
Sbjct: 41 FVCIPFDPKFMMWLMIISFFIVLLTCSSLVACYI 74
>U41036-1|AAA82384.1| 315|Caenorhabditis elegans Hypothetical
protein T14E8.2 protein.
Length = 315
Score = 28.7 bits (61), Expect = 9.3
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +2
Query: 389 VIPGQQHMYLRAPSPQDRQKWLVALGSAKACVDAQDIKGIIFEDTNTLSHKKSE 550
+IPG+ M P D + LV + + C D +D G ED + KK E
Sbjct: 134 MIPGRDMMACPKKDPNDPLEKLVCIEPSALCDDHRDCHGAEDEDPHFCMFKKLE 187
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,006,067
Number of Sequences: 27780
Number of extensions: 475582
Number of successful extensions: 1264
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3537281262
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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