Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_N17
         (1277 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    28   2.4  
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    28   3.2  
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    27   4.2  
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos...    26   9.7  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   9.7  

>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +3

Query: 318 AIDLLTNDECRLLLEVEDFFN 380
           +I+ +TND+ R++ E+E F+N
Sbjct: 358 SINFVTNDDVRMMREIEQFYN 378


>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 565

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 1001 EXXRHXHYYXXXRKCQLRGSVTDQFLDGV 915
            E  R  H Y   RK ++RG   D FLD V
Sbjct: 204  ETHRKNHQYMGLRKDRVRGEQYDSFLDNV 232


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 451 STRHHRRS*NQVPPNSLTIFCSS*TVNANK 540
           STR   +  N+VP N L I+C    +  NK
Sbjct: 74  STRERLKLYNKVPDNGLVIYCGEVIMEGNK 103


>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 713 LWCCRVNAFNTAAESAGTRDSVAS 784
           LW CR N+F+     A  +DSV+S
Sbjct: 124 LWDCRSNSFSPIQVLADAKDSVSS 147


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = +3

Query: 582  PSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAVELTHLTPPQSPP 761
            P+     S V     P P A++ AS+P + S P  ++   +         T + P Q P 
Sbjct: 895  PAAMSRTSSVSTLPPPPPTASMTASAPAIASPPPPKVGETYHP--PTASGTRVPPVQQPS 952

Query: 762  GP 767
             P
Sbjct: 953  HP 954


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,859,889
Number of Sequences: 5004
Number of extensions: 72171
Number of successful extensions: 182
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 695512300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)