Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_N15
(1271 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.05 |sui1|psu1|translation initiation factor eIF1|Schizo... 128 1e-30
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce... 35 0.028
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 30 0.78
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 30 0.78
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 30 0.78
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 30 0.78
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 27 7.3
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 27 7.3
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 26 9.7
>SPBC23G7.05 |sui1|psu1|translation initiation factor
eIF1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 109
Score = 128 bits (310), Expect = 1e-30
Identities = 61/110 (55%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Frame = +3
Query: 162 SIQNLXTFDPFADAIKSSEDDVQD-GLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 338
+IQN T DPFAD + +DD Q +H+RIQQRNGRKTLTTVQGL E+D K+I+RA
Sbjct: 3 AIQNFNTVDPFAD---TGDDDAQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRAL 59
Query: 339 KKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 488
KK+FACNGT+V+ + GEV+QLQGDQR + ++LT+ ++ + +K+HGF
Sbjct: 60 KKDFACNGTIVKDDDLGEVIQLQGDQRIKVMEFLTQQLGLQKKNIKIHGF 109
>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 190
Score = 34.7 bits (76), Expect = 0.028
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +3
Query: 240 VHVRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQ 416
V ++ +R RK +TTVQGL + + KK + +FA +V + + + + +QGD
Sbjct: 99 VLIKTIERTKRKRVTTVQGLDAFGIETKKAAKMLANKFATGASVTKTADKKDEIVVQGDL 158
Query: 417 RENICQWLTKSGLVKPE 467
+I ++ + PE
Sbjct: 159 NYDIFDFILEKFKEVPE 175
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 29.9 bits (64), Expect = 0.78
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 719 QSNEIVNIPNSLFLFLYDIVFLNCCN 796
Q E +++PN+LFL Y + F +C N
Sbjct: 75 QKEEFIDVPNTLFLGCYTMGFQSCIN 100
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 29.9 bits (64), Expect = 0.78
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 719 QSNEIVNIPNSLFLFLYDIVFLNCCN 796
Q E +++PN+LFL Y + F +C N
Sbjct: 75 QKEEFIDVPNTLFLGCYTMGFQSCIN 100
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 29.9 bits (64), Expect = 0.78
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 719 QSNEIVNIPNSLFLFLYDIVFLNCCN 796
Q E +++PN+LFL Y + F +C N
Sbjct: 75 QKEEFIDVPNTLFLGCYTMGFQSCIN 100
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 29.9 bits (64), Expect = 0.78
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 719 QSNEIVNIPNSLFLFLYDIVFLNCCN 796
Q E +++PN+LFL Y + F +C N
Sbjct: 75 QKEEFIDVPNTLFLGCYTMGFQSCIN 100
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 743 PNSLFLFLYDIVFLNCCNNSINK*HVFV 826
PN+L LF + L CN+SI +FV
Sbjct: 182 PNALLLFFPSYLILRKCNSSIKFRQIFV 209
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 221 VLRAFDSIGEWVECXEILDGHTIERRVSLFQR 126
+LR S+ W+ + +G T+E+RV LF+R
Sbjct: 25 LLRDPYSLKSWLRYIKTHEGSTLEKRVLLFER 56
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 26.2 bits (55), Expect = 9.7
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +3
Query: 123 VSLKQRDPTFNRMSIQNLXTFDPFAD-AIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGL 299
V + P S++ L D AI D + + H R+Q +N R T QG+
Sbjct: 50 VEKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGI 109
Query: 300 SS 305
S
Sbjct: 110 ES 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,693,598
Number of Sequences: 5004
Number of extensions: 70388
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 691537944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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