Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_N15
         (1271 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0685 - 20679883-20679927,20680034-20680087,20680179-206803...   130   3e-30
05_05_0359 + 24393254-24393260,24393952-24394163,24394243-243942...   124   1e-28
04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949...   112   5e-25
01_06_0992 - 33644712-33644726,33644769-33644822,33644915-336451...   112   6e-25
01_01_0671 - 5137787-5137843,5138420-5138503,5138595-5138662,513...    36   0.090
01_06_1413 + 37149038-37149295,37149392-37149603,37149687-371499...    29   7.8  

>07_03_0685 - 20679883-20679927,20680034-20680087,20680179-20680390,
            20680476-20680550,20683094-20683168,20686196-20686264,
            20686349-20686502,20686577-20686654,20689102-20689194,
            20689491-20689640,20690134-20690268,20691009-20691098,
            20691412-20691453,20691796-20692053,20692131-20692207,
            20693126-20693186,20693687-20693905,20694936-20695208,
            20695314-20695505,20695841-20696011
          Length = 840

 Score =  130 bits (313), Expect = 3e-30
 Identities = 62/113 (54%), Positives = 81/113 (71%), Gaps = 3/113 (2%)
 Frame = +3

Query: 159  MSIQNLXTFDPFADAIKSSEDDVQDG---LVHVRIQQRNGRKTLTTVQGLSSEYDLKKIV 329
            + IQ    FDPFA+A  + +     G    VHVRIQQRNGRK+LTTVQGL  E+   KI+
Sbjct: 729  LDIQIPTAFDPFAEA-NAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 787

Query: 330  RACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 488
            +  KKEF CNGTVV+ PE G+V+QLQGDQR+N+  +L ++G+VK E +K+HGF
Sbjct: 788  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 840


>05_05_0359 +
           24393254-24393260,24393952-24394163,24394243-24394296,
           24394400-24394444
          Length = 105

 Score =  124 bits (300), Expect = 1e-28
 Identities = 58/104 (55%), Positives = 76/104 (73%), Gaps = 3/104 (2%)
 Frame = +3

Query: 186 DPFADAIKSSEDDVQDGL---VHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 356
           DPFA+A  + +     G    VHVRIQQRNGRK+LTTVQGL  EY   KI++  KKEF C
Sbjct: 3   DPFAEA-NAEDSGAGPGAKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNKILKDLKKEFCC 61

Query: 357 NGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 488
           NGTVV+ PE G+V+QLQGDQR+N+  +L ++G+ K + +K+HGF
Sbjct: 62  NGTVVQDPELGQVIQLQGDQRKNVATFLVQAGIAKKDNIKIHGF 105


>04_04_1237 -
           31991817-31992569,31993452-31993550,31994343-31994976,
           31995329-31995585
          Length = 580

 Score =  112 bits (270), Expect = 5e-25
 Identities = 47/83 (56%), Positives = 64/83 (77%)
 Frame = +3

Query: 240 VHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQR 419
           VHVR+QQRNGRKTLTTVQG+  EY+  K++R  K+E  CNG VVE  E G+++QLQGD R
Sbjct: 498 VHVRVQQRNGRKTLTTVQGIGGEYNYAKVLRDLKRELCCNGNVVEDKELGKIIQLQGDHR 557

Query: 420 ENICQWLTKSGLVKPEQLKVHGF 488
            ++  +L K+G+V+ + +KVHGF
Sbjct: 558 NSVSDFLAKAGMVRKDNIKVHGF 580


>01_06_0992 -
           33644712-33644726,33644769-33644822,33644915-33645126,
           33645436-33645472
          Length = 105

 Score =  112 bits (269), Expect = 6e-25
 Identities = 55/103 (53%), Positives = 71/103 (68%), Gaps = 3/103 (2%)
 Frame = +3

Query: 159 MSIQNLXTFDPFADAIKSSEDDVQDG---LVHVRIQQRNGRKTLTTVQGLSSEYDLKKIV 329
           + +Q    FDPFA+A  + +  V  G    VHVRIQQRNGRK+LTTVQGL  EY   KI+
Sbjct: 4   LDVQLPSAFDPFAEA-NAEDSSVGAGSKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNKIL 62

Query: 330 RACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLV 458
           +  KKEF CNGTVV+ PE G+V+QLQGDQR+N+  +L +   +
Sbjct: 63  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVATFLVQIAFI 105


>01_01_0671 -
           5137787-5137843,5138420-5138503,5138595-5138662,
           5138854-5138935,5139282-5139346,5139504-5139747
          Length = 199

 Score = 35.5 bits (78), Expect = 0.090
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +3

Query: 261 RNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQW 437
           RN RK +T V+GL      L    +   K+FA   +VV+ P   E + +QGD   +I ++
Sbjct: 115 RNKRKCVTVVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEF 174

Query: 438 LTKSGLVKPE 467
           +T +    PE
Sbjct: 175 ITDTWPDVPE 184


>01_06_1413 +
           37149038-37149295,37149392-37149603,37149687-37149951,
           37150099-37150407
          Length = 347

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 110 VVSQRFVETKRPYVQSYVHPESXHI 184
           V +QR+V  K P+V+ + HPE  H+
Sbjct: 299 VEAQRYVAEKLPWVRYHEHPEGGHL 323


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,496,367
Number of Sequences: 37544
Number of extensions: 470519
Number of successful extensions: 1049
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3945842028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)