Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_N15
         (1271 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58762-4|AAK39303.1|  109|Caenorhabditis elegans Hypothetical pr...   131   1e-30
Z79600-6|CAB01879.2|  529|Caenorhabditis elegans Hypothetical pr...    32   0.75 
U39999-10|AAA81108.2|  306|Caenorhabditis elegans Serpentine rec...    30   4.0  
AC024201-6|AAF36016.1|  183|Caenorhabditis elegans Hypothetical ...    29   7.0  
U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho...    29   9.3  
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi...    29   9.3  

>U58762-4|AAK39303.1|  109|Caenorhabditis elegans Hypothetical
           protein T27F7.3b protein.
          Length = 109

 Score =  131 bits (316), Expect = 1e-30
 Identities = 64/112 (57%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
 Frame = +3

Query: 159 MSIQNLXTFDPFADAIKS--SEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVR 332
           MSI NL    P ADA +   +ED V+ G+ H+RIQQR GRKT+TTVQG+ +EYDLK+IV+
Sbjct: 1   MSIANLNR--P-ADAFEQLETEDGVRQGVCHIRIQQRTGRKTITTVQGIGTEYDLKRIVQ 57

Query: 333 ACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 488
             KK+ +CNGT+VEHPEYGEV+QL GDQR+ +  +L K G+V     +VHGF
Sbjct: 58  YLKKKHSCNGTIVEHPEYGEVIQLTGDQRDKVKDFLIKVGIVNESNCRVHGF 109


>Z79600-6|CAB01879.2|  529|Caenorhabditis elegans Hypothetical
           protein F59C6.8 protein.
          Length = 529

 Score = 32.3 bits (70), Expect = 0.75
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +3

Query: 144 PTFNRMSIQNLXTFDPF-ADAIKSSEDDVQDGL-VHVRIQQRNGRKTLTTV 290
           PTFNR  I N   FDP+  +A K +   + DGL +  + + R  + T+ T+
Sbjct: 397 PTFNRSKISNPPFFDPYHLNATKRAIYKISDGLKIQRKFKNRVSQGTMKTI 447


>U39999-10|AAA81108.2|  306|Caenorhabditis elegans Serpentine
           receptor, class x protein95 protein.
          Length = 306

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 647 FLCCIKYCKSYIIAAVSSHKLQNNQSNEI-VNIPNSLFLFLYDIVFLNCCNNSI 805
           F+ C+     YII       L +    +I V +P+  FL L+D + +  CNN I
Sbjct: 228 FIQCMAQSLLYIIDVFLISSLHSGSFGDILVALPSMAFLALFDGLIMLLCNNDI 281


>AC024201-6|AAF36016.1|  183|Caenorhabditis elegans Hypothetical
           protein Y71F9B.3 protein.
          Length = 183

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +3

Query: 252 IQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENIC 431
           ++Q+ G K L  V G+     L  ++     +  CN     +P Y  +  ++   +E+  
Sbjct: 31  VEQKTGVKRLHLVLGVVGLQALY-LIFGHSAQLVCNFMGFVYPAYMSIKAIESSNKEDDT 89

Query: 432 QWLT 443
           QWLT
Sbjct: 90  QWLT 93


>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I
           homolog protein.
          Length = 1257

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 713 NNQSNEIVNIPNSLFLFLYDIVFLNCCNNSIN 808
           N   N I  IPNS+   L D++FL+  NN ++
Sbjct: 132 NLSYNNIETIPNSVCANLIDLLFLDLSNNKLD 163


>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
           flightless) homologprotein 1 protein.
          Length = 1257

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 713 NNQSNEIVNIPNSLFLFLYDIVFLNCCNNSIN 808
           N   N I  IPNS+   L D++FL+  NN ++
Sbjct: 132 NLSYNNIETIPNSVCANLIDLLFLDLSNNKLD 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,818,580
Number of Sequences: 27780
Number of extensions: 410488
Number of successful extensions: 1014
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3547715720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)