Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_N14
         (1262 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...   296   5e-81
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    29   1.0  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    28   2.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   2.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   2.4  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    27   4.1  
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    27   5.5  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    27   7.2  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    26   9.6  

>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 498

 Score =  296 bits (726), Expect = 5e-81
 Identities = 134/289 (46%), Positives = 190/289 (65%), Gaps = 2/289 (0%)
 Frame = +1

Query: 172  ILCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGCERYLQPPSEWVVCALE 351
            ILCC+C VP   N + MC+ C++   DIT GIP+++T+  CR CERY+QPP+ W++  LE
Sbjct: 22   ILCCECGVPTPPNAAAMCMDCIKMTTDITSGIPRESTVNHCRECERYMQPPNNWMIAPLE 81

Query: 352  SREXXXXXXXXXXXXSRVKLIDAGFAWTEPHSKRIKVKLTVQGEVIGGAVLQQTFIVEFT 531
            SRE            ++V+L+DA F WTEPHS+RIKVKLTVQ E     +LQQ+F VEF 
Sbjct: 82   SRELMAICLKKLRGLNQVRLVDANFIWTEPHSRRIKVKLTVQKEAFTNTILQQSFQVEFY 141

Query: 532  IQHQMCDACHRSEAQDYWRALVQVRQRANNRKTFYYLEQLILKHKAHENTLGIKPKHDGL 711
            + +  C  C R+     W+A+ QVRQ+  +++TF YLEQ+ILKHKAH NT+ IK   DG+
Sbjct: 142  VNNTQCPDCARTYTPHIWKAVCQVRQKVLHKRTFLYLEQIILKHKAHMNTVNIKETKDGI 201

Query: 712  DFFYSTENHARKMVDFIQSVLPIKCQHSKKLISHDIHSNIYNYKFTFSVEIVPLSKDSVV 891
            DF++    HA KMV+F+ +V+PI+ + S++LIS D  SN  NYKFT+S+EIVP+ KD +V
Sbjct: 202  DFYFGQRAHAIKMVEFLSAVVPIRYKGSEELISEDFKSNTANYKFTYSIEIVPICKDDLV 261

Query: 892  CLPKKLTQQXGSISPIV*CTE--*LXQFIDXR*YGQLRCIIHXYWKIXF 1032
            CLPK + +  G+I+ +V CT+     +F+D         +   YW+  F
Sbjct: 262  CLPKTVAKAHGNIAQLVVCTKVGPTIRFLDPLTLQTCDMLPSIYWRTPF 310


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/54 (24%), Positives = 22/54 (40%)
 Frame = +1

Query: 625 KTFYYLEQLILKHKAHENTLGIKPKHDGLDFFYSTENHARKMVDFIQSVLPIKC 786
           K FY    L +  + H N       +DG D  + T+ H  + ++  +   P  C
Sbjct: 62  KAFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERHIEVHRKPKPYAC 115


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1009

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +1

Query: 535  QHQMCD--ACHRSEAQDYWRALVQVRQRANNRKTFYYLEQLILKHKAHENTLGIKPKHDG 708
            QHQ C+  A + ++   Y+ AL +   R   +    +  + +L+H A  +T+    +  G
Sbjct: 810  QHQDCNIQAIYVTKPSQYFHALRRNIHRQFRKPLVIFFSKSLLRHPAARSTIDEFDEKHG 869

Query: 709  LDFFYSTENHARKMV 753
                   E H + ++
Sbjct: 870  FKLILEEEEHGKSIL 884


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 23/94 (24%), Positives = 37/94 (39%)
 Frame = +1

Query: 652 ILKHKAHENTLGIKPKHDGLDFFYSTENHARKMVDFIQSVLPIKCQHSKKLISHDIHSNI 831
           +L +KA+    G     D      S +N +   V+ I  +L  K +HS    SHD    +
Sbjct: 282 LLNYKANSTLFGGVTIWDTSLAAMSYDNSSETFVEAIHKILDTKSKHSSSKSSHDSSQGL 341

Query: 832 YNYKFTFSVEIVPLSKDSVVCLPKKLTQQXGSIS 933
              + T S+ + P S  S        +    +IS
Sbjct: 342 ---ESTSSIALNPTSSISSTSSSSSTSSAISTIS 372


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 754 DFIQSVL--PIKCQHSKKLISHDIHSNIYNYKFTFS 855
           DFI   L  P KC   K+    +IH N+ NY + FS
Sbjct: 815 DFIVGNLSTPPKCAIGKRNFLKNIHPNVENYAYQFS 850


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 721 YSTENHARKMVDFIQSVLPIKCQHSKKLISHDIHSNIYNYKFTF 852
           Y   N+A    + +Q  L   C+ S  ++ H+I + +YN    F
Sbjct: 350 YPDINYAHCFAENVQGDLIFTCEISLTVLKHEIRTKLYNSNNVF 393


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 20/77 (25%), Positives = 33/77 (42%)
 Frame = +1

Query: 673 ENTLGIKPKHDGLDFFYSTENHARKMVDFIQSVLPIKCQHSKKLISHDIHSNIYNYKFTF 852
           +N  G K +HD +DF    EN   +        +P     S K+I+      I  + F F
Sbjct: 119 KNIPGFKTRHDNVDFAIIRENTEGEYSGLEHQSVP-GVVESLKIITEYKSKRIAQFAFDF 177

Query: 853 SVEIVPLSKDSVVCLPK 903
           +++     + SV C+ K
Sbjct: 178 ALQ---NGRKSVTCIHK 191


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 534 NCKFNYKCLLEHCSSD 487
           NCKF  KC LEH   D
Sbjct: 77  NCKFGSKCALEHVLPD 92


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 213 LKYVCSLFKGSCRHHRWNTQ 272
           LK+ C++F+G+ R H + T+
Sbjct: 220 LKHACTMFRGTHRFHSYTTE 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,297,204
Number of Sequences: 5004
Number of extensions: 83693
Number of successful extensions: 203
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 685576410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)