Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_N14
         (1262 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC013317-1|AAH13317.1|  503|Homo sapiens NMD3 homolog (S. cerevi...   353   8e-97
AF132941-1|AAD27716.1|  503|Homo sapiens CGI-07 protein protein.      353   8e-97
AY164485-1|AAO32798.1| 1732|Homo sapiens polycystic kidney disea...    35   0.54 

>BC013317-1|AAH13317.1|  503|Homo sapiens NMD3 homolog (S.
           cerevisiae) protein.
          Length = 503

 Score =  353 bits (868), Expect = 8e-97
 Identities = 154/260 (59%), Positives = 201/260 (77%), Gaps = 1/260 (0%)
 Frame = +1

Query: 172 ILCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGCERYLQPPSEWVVCALE 351
           ILCC+C VPI  NP+N+CVACLR+ VDI+ GIPKQ ++ FC+ C+RY QPP  W+ CALE
Sbjct: 15  ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALE 74

Query: 352 SREXXXXXXXXXXXX-SRVKLIDAGFAWTEPHSKRIKVKLTVQGEVIGGAVLQQTFIVEF 528
           SRE             S+V+L+DAGF WTEPHSKR+KVKLT+Q EV+ GA+LQQ F+V++
Sbjct: 75  SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134

Query: 529 TIQHQMCDACHRSEAQDYWRALVQVRQRANNRKTFYYLEQLILKHKAHENTLGIKPKHDG 708
            +Q QMC  CHR EA+D+W+A++QVRQ+  ++KTFYYLEQLILK+  H+NTL IK  HDG
Sbjct: 135 VVQSQMCGDCHRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHDG 194

Query: 709 LDFFYSTENHARKMVDFIQSVLPIKCQHSKKLISHDIHSNIYNYKFTFSVEIVPLSKDSV 888
           LDF+YS++ HA+KMV+F+Q  +P + + S++LIS DIHSN YNYK TFSVEIVP+ KD+V
Sbjct: 195 LDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICKDNV 254

Query: 889 VCLPKKLTQQXGSISPIV*C 948
           VCL  KL Q  G+++ I  C
Sbjct: 255 VCLSPKLAQSLGNMNQICVC 274


>AF132941-1|AAD27716.1|  503|Homo sapiens CGI-07 protein protein.
          Length = 503

 Score =  353 bits (868), Expect = 8e-97
 Identities = 154/260 (59%), Positives = 201/260 (77%), Gaps = 1/260 (0%)
 Frame = +1

Query: 172 ILCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGCERYLQPPSEWVVCALE 351
           ILCC+C VPI  NP+N+CVACLR+ VDI+ GIPKQ ++ FC+ C+RY QPP  W+ CALE
Sbjct: 15  ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALE 74

Query: 352 SREXXXXXXXXXXXX-SRVKLIDAGFAWTEPHSKRIKVKLTVQGEVIGGAVLQQTFIVEF 528
           SRE             S+V+L+DAGF WTEPHSKR+KVKLT+Q EV+ GA+LQQ F+V++
Sbjct: 75  SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134

Query: 529 TIQHQMCDACHRSEAQDYWRALVQVRQRANNRKTFYYLEQLILKHKAHENTLGIKPKHDG 708
            +Q QMC  CHR EA+D+W+A++QVRQ+  ++KTFYYLEQLILK+  H+NTL IK  HDG
Sbjct: 135 VVQSQMCGDCHRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHDG 194

Query: 709 LDFFYSTENHARKMVDFIQSVLPIKCQHSKKLISHDIHSNIYNYKFTFSVEIVPLSKDSV 888
           LDF+YS++ HA+KMV+F+Q  +P + + S++LIS DIHSN YNYK TFSVEIVP+ KD+V
Sbjct: 195 LDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICKDNV 254

Query: 889 VCLPKKLTQQXGSISPIV*C 948
           VCL  KL Q  G+++ I  C
Sbjct: 255 VCLSPKLAQSLGNMNQICVC 274


>AY164485-1|AAO32798.1| 1732|Homo sapiens polycystic kidney disease
            1-like 3 protein.
          Length = 1732

 Score = 35.1 bits (77), Expect = 0.54
 Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
 Frame = +1

Query: 538  HQMCDACHRSEAQDYWRALVQVRQRANNRKTFYYLEQLILKHKAHENTLGIKPKHDGLDF 717
            H     CH+ + + +W  +V      N+     YL +++ + K+H  TLG+   H   DF
Sbjct: 1047 HLEGQGCHQ-QGERHWARVVP----ENHHHFCCYLHRVLQRLKSHLGTLGLTQGHQSCDF 1101

Query: 718  FYSTENHARKMVDFIQS-VLPIKCQHSKKLISHDIHSN 828
                 +  +K+ + +++ +LP + + S+++ S  I S+
Sbjct: 1102 L-DAASQLQKLQELLETHILPTEQEPSREVTSFAILSS 1138


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,657,034
Number of Sequences: 237096
Number of extensions: 2897967
Number of successful extensions: 4762
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4760
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 18055163440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)