Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_N14
(1262 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72516-2|CAA96689.2| 513|Caenorhabditis elegans Hypothetical pr... 313 2e-85
Z29094-6|CAD45581.1| 457|Caenorhabditis elegans Hypothetical pr... 30 4.0
Z29094-5|CAA82336.1| 465|Caenorhabditis elegans Hypothetical pr... 30 4.0
Z93384-3|CAB07634.3| 1341|Caenorhabditis elegans Hypothetical pr... 29 9.2
Z93384-2|CAE54901.1| 1320|Caenorhabditis elegans Hypothetical pr... 29 9.2
U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha ... 29 9.2
AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta... 29 9.2
AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alph... 29 9.2
>Z72516-2|CAA96689.2| 513|Caenorhabditis elegans Hypothetical
protein T25G3.3 protein.
Length = 513
Score = 313 bits (769), Expect = 2e-85
Identities = 137/260 (52%), Positives = 185/260 (71%), Gaps = 1/260 (0%)
Frame = +1
Query: 172 ILCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGCERYLQPPSEWVVCALE 351
I CC+C V IE NP+NMC CLR+ VDIT+GI +Q T++ C+ C+RY PPS W+ LE
Sbjct: 13 IACCECGVAIEPNPANMCSGCLRSRVDITEGITRQCTIYMCKFCDRYFVPPSAWMRAELE 72
Query: 352 SREXXXXXXXXXXXX-SRVKLIDAGFAWTEPHSKRIKVKLTVQGEVIGGAVLQQTFIVEF 528
S+E ++V+L DA F WTE HSKRIKVK+T+Q EV +LQQ +VEF
Sbjct: 73 SKELLSICLKKLKPMLTKVRLTDACFVWTEAHSKRIKVKITIQKEVFTNTILQQAVVVEF 132
Query: 529 TIQHQMCDACHRSEAQDYWRALVQVRQRANNRKTFYYLEQLILKHKAHENTLGIKPKHDG 708
T+ Q+CD C R+EA+D+WRA VQVRQRA +KT +YLEQL+LKH AH+ G+KP G
Sbjct: 133 TVHSQLCDDCRRAEAKDFWRACVQVRQRAEFKKTLFYLEQLLLKHSAHKECTGVKPVPTG 192
Query: 709 LDFFYSTENHARKMVDFIQSVLPIKCQHSKKLISHDIHSNIYNYKFTFSVEIVPLSKDSV 888
+DF+++ + ARK VDF+ +VLP K ++++L+SHD +N Y+YK TF VEIVP+ +D++
Sbjct: 193 IDFYFAKQQEARKFVDFLMTVLPCKYHYAQELVSHDTKNNTYDYKHTFCVEIVPICRDNI 252
Query: 889 VCLPKKLTQQXGSISPIV*C 948
VCLPKK QQ G++S IV C
Sbjct: 253 VCLPKKQAQQYGNMSQIVLC 272
>Z29094-6|CAD45581.1| 457|Caenorhabditis elegans Hypothetical
protein C07A9.7b protein.
Length = 457
Score = 29.9 bits (64), Expect = 4.0
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +1
Query: 172 ILCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGCERYLQP 321
++C + + + +P N C CL+ I + A+ +C+ CE + +P
Sbjct: 43 VVCVETGITVNVDPQN-CYRCLK--------ITENASFAYCKNCEEFYEP 83
>Z29094-5|CAA82336.1| 465|Caenorhabditis elegans Hypothetical
protein C07A9.7a protein.
Length = 465
Score = 29.9 bits (64), Expect = 4.0
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +1
Query: 172 ILCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGCERYLQP 321
++C + + + +P N C CL+ I + A+ +C+ CE + +P
Sbjct: 43 VVCVETGITVNVDPQN-CYRCLK--------ITENASFAYCKNCEEFYEP 83
>Z93384-3|CAB07634.3| 1341|Caenorhabditis elegans Hypothetical protein
H08M01.2b protein.
Length = 1341
Score = 28.7 bits (61), Expect = 9.2
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Frame = +1
Query: 664 KAHENTLGIKPKHDGLDFFYSTENHARKMVDFIQSVLPIKCQHSKKLI-----SHDIHSN 828
K +L P+ D YS+ N + V + S LP K SKKL+ +HD+ ++
Sbjct: 1073 KMATRSLPQSPRTDRKAKLYSSLNSTTEKVSNVLSWLPSKT--SKKLMKNKSATHDLSTS 1130
Query: 829 IYNYKFTFSVEIVPLSKDSVVCLPKKLTQQ 918
+ NY + S + V + +++ L K Q
Sbjct: 1131 LINYPASTSTQGVIAANETLETLCSKSPSQ 1160
>Z93384-2|CAE54901.1| 1320|Caenorhabditis elegans Hypothetical protein
H08M01.2a protein.
Length = 1320
Score = 28.7 bits (61), Expect = 9.2
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Frame = +1
Query: 664 KAHENTLGIKPKHDGLDFFYSTENHARKMVDFIQSVLPIKCQHSKKLI-----SHDIHSN 828
K +L P+ D YS+ N + V + S LP K SKKL+ +HD+ ++
Sbjct: 1073 KMATRSLPQSPRTDRKAKLYSSLNSTTEKVSNVLSWLPSKT--SKKLMKNKSATHDLSTS 1130
Query: 829 IYNYKFTFSVEIVPLSKDSVVCLPKKLTQQ 918
+ NY + S + V + +++ L K Q
Sbjct: 1131 LINYPASTSTQGVIAANETLETLCSKSPSQ 1160
>U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha
family protein 2 protein.
Length = 531
Score = 28.7 bits (61), Expect = 9.2
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = -2
Query: 286 IMSLVWVFHL*CLHE----PLNKLHTYLRGLLL*VQHTDSTIFVYCCLKKRFL 140
+ ++ W F C H+ PL L +GL+ VQHTD + C +L
Sbjct: 236 VRTIAWAFSNMCRHKNPHAPLEVLRVLSKGLVKLVQHTDRQVRQDACWAVSYL 288
>AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta
binding domain proteinprotein.
Length = 531
Score = 28.7 bits (61), Expect = 9.2
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = -2
Query: 286 IMSLVWVFHL*CLHE----PLNKLHTYLRGLLL*VQHTDSTIFVYCCLKKRFL 140
+ ++ W F C H+ PL L +GL+ VQHTD + C +L
Sbjct: 236 VRTIAWAFSNMCRHKNPHAPLEVLRVLSKGLVKLVQHTDRQVRQDACWAVSYL 288
>AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alpha 2
protein.
Length = 531
Score = 28.7 bits (61), Expect = 9.2
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = -2
Query: 286 IMSLVWVFHL*CLHE----PLNKLHTYLRGLLL*VQHTDSTIFVYCCLKKRFL 140
+ ++ W F C H+ PL L +GL+ VQHTD + C +L
Sbjct: 236 VRTIAWAFSNMCRHKNPHAPLEVLRVLSKGLVKLVQHTDRQVRQDACWAVSYL 288
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,764,735
Number of Sequences: 27780
Number of extensions: 475492
Number of successful extensions: 987
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3516412346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -