Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_N13
         (1339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr 3||...   151   2e-37
SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3 |S...    30   0.63 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   6.8  

>SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score =  151 bits (367), Expect = 2e-37
 Identities = 70/88 (79%), Positives = 84/88 (95%)
 Frame = +2

Query: 248 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREV 427
           E+Y+ YIYKVLKQVHPDTGIS++AM I+NSFVNDIFERIA EAS+LA YNK+STI+SRE+
Sbjct: 35  ETYSSYIYKVLKQVHPDTGISNQAMRILNSFVNDIFERIATEASKLAAYNKKSTISSREI 94

Query: 428 QTSVRLLLPGELAKHAVSEGTKAVTKYT 511
           QT+VRL+LPGELAKHAV+EGTK+VTKY+
Sbjct: 95  QTAVRLILPGELAKHAVTEGTKSVTKYS 122


>SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 116

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 266 IYKVLKQVHPDTG-ISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVR 442
           + +++K   P+   IS +A   +   V++    +  EAS      KR TIT  +V  ++ 
Sbjct: 17  VARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGEDVLLALN 76

Query: 443 LL 448
            L
Sbjct: 77  TL 78


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.4 bits (48), Expect(2) = 6.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 950 PPPPPPXP 927
           PPPPPP P
Sbjct: 190 PPPPPPPP 197



 Score = 21.4 bits (43), Expect(2) = 6.8
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = -3

Query: 986 PXXXXXSXXXXXPPPPPP 933
           P     S     PPPPPP
Sbjct: 179 PATSLPSDYNPPPPPPPP 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,797,256
Number of Sequences: 5004
Number of extensions: 44854
Number of successful extensions: 170
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 735255860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)