Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_N11
         (1289 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73425-5|CAA97787.1|  427|Caenorhabditis elegans Hypothetical pr...    31   1.8  
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr...    30   4.1  

>Z73425-5|CAA97787.1|  427|Caenorhabditis elegans Hypothetical
           protein F12F6.9 protein.
          Length = 427

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -2

Query: 373 PYLSTPAQTLSGVICDRERSFRTLSATLFRPFS-ARARYVLKDKQGLSILKGNPGPGGSS 197
           PYL + A++  G++  +  SF+ L + + R  S     +V + ++ +S   G PG  GS+
Sbjct: 26  PYLISQAESAHGIVMSKIESFKNLESEITRELSDFTFLHVARKREIISCEPGYPGLPGSN 85


>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
           protein F07A11.4 protein.
          Length = 1095

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +3

Query: 321 SRSHITPDNVWAGVLKYGA--PSTPRTKDPYYLECLSELKA 437
           S SH TP N + G+ KY     ST     PYY    S L +
Sbjct: 115 SLSHSTPHNTYRGISKYSTIERSTVADTKPYYSSATSSLSS 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,818,423
Number of Sequences: 27780
Number of extensions: 317945
Number of successful extensions: 614
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3610322468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)