Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_N11
         (1289 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   2.5  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    24   3.3  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   5.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   7.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 301  SATLFRPFSARARYVLKDKQGLSILKGNPGPGGSSFP 191
            +AT  RP +A  +  LK ++  +   G PGP G   P
Sbjct: 1111 AATNIRPGTADNKPQLKPQKPFTSPGGIPGPNGIKMP 1147


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 20/73 (27%), Positives = 30/73 (41%)
 Frame = +3

Query: 108 NRRYKTLDIASFEYPHFEEEVEYXLVSHGKXXXXXXXXXXRIERPCLSFKTYRALAEKGL 287
           NR Y+  D   +E  H E+E    L+              R +R   +  +YR   E   
Sbjct: 242 NREYRKKD-RQYEKLHNEKE---KLLEERTSRKRYSRSREREQRSYKNENSYRKYRETSK 297

Query: 288 KSVADRVLKERSR 326
           +   DR+ +ERSR
Sbjct: 298 ERSRDRIERERSR 310


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 491 YSLYGLIQLKWF 456
           YSL+G+I + WF
Sbjct: 204 YSLFGMIMMYWF 215


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 253 KDKQGLSILKGNPGPGG 203
           KDK   + + G+PG GG
Sbjct: 276 KDKPNSTTMNGSPGSGG 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,104
Number of Sequences: 438
Number of extensions: 3874
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44303247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)