Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_N10
(1297 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0880 + 22203440-22204324,22204763-22204876,22204964-222054... 38 0.017
06_01_1121 + 9232333-9232857,9233383-9234174 31 1.5
06_03_1080 + 27436389-27436742,27437573-27437804,27437911-274381... 31 2.6
02_04_0577 - 24011542-24011906,24012285-24012385,24013029-240132... 31 2.6
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741... 30 4.6
03_02_0731 - 10786122-10787018,10787859-10788449,10788659-107887... 30 4.6
11_06_0217 - 21353558-21353660,21354680-21355510,21356340-213564... 29 6.1
07_03_1090 + 23891294-23892222,23892317-23892516,23895241-238954... 29 6.1
07_01_0134 + 977527-977757,977842-977937,978479-978519,979550-97... 29 6.1
04_04_0274 - 24078653-24078889,24079701-24080027 29 6.1
07_03_0266 - 16015949-16016524,16016746-16016782,16017274-160178... 29 8.0
03_05_0695 - 26851370-26851495,26852949-26853398 29 8.0
>08_02_0880 +
22203440-22204324,22204763-22204876,22204964-22205455,
22205646-22205819,22206589-22206978,22209927-22210022,
22210645-22210760,22210872-22211042,22211126-22211285,
22211388-22211573,22211665-22211793,22211918-22211996,
22212159-22212268
Length = 1033
Score = 37.9 bits (84), Expect = 0.017
Identities = 23/66 (34%), Positives = 30/66 (45%)
Frame = -3
Query: 617 STRSLVCPPT*LWSGRTSTSCPSSRDKDECTRVCGCVRXRSALRRSGSPIPQPRE*TITS 438
+T +L P + G T S R C+ +R + A RS SP P PR T
Sbjct: 93 TTGALYGPTSLAGGGAAHTPPGSGRSLSRCSSTSSRIRKKFAWLRSPSPAPAPR--APTP 150
Query: 437 AEPPPP 420
+EPPPP
Sbjct: 151 SEPPPP 156
>06_01_1121 + 9232333-9232857,9233383-9234174
Length = 438
Score = 31.5 bits (68), Expect = 1.5
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 13/117 (11%)
Frame = +1
Query: 325 GAHRTTLPGVLDSDIPYSSGTSISSHLKEVDSGGGGS---AEVMVYSL---GWGMGEPER 486
G H +PGV D YS + + L+ + +G GG+ V+V +L G
Sbjct: 267 GCHHCLVPGVADLKRTYSLRAAFRTALRALTAGAGGAGFDGTVIVRTLSPTSHFEGGEWN 326
Query: 487 RSADRKRTQPHTLVHSSLSLDDGHEVDVLPLHN-------QVGGHTRLLVLNDSTVI 636
+ D +RT+P + L L D H V V GG RLL+++ + V+
Sbjct: 327 KGGDCRRTRPTAARMAGLDL-DFHTVQVEEFRRAEAAAAAASGGAARLLLMDTTAVM 382
>06_03_1080 +
27436389-27436742,27437573-27437804,27437911-27438159,
27438467-27438517,27438676-27438936,27439019-27439071,
27439201-27439315,27441666-27441920,27442423-27443480
Length = 875
Score = 30.7 bits (66), Expect = 2.6
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 373 YSSGTSISSHLKEVDSGGGGSAEVMVYSLGWGMGEPERRSADRK 504
+ +GT+ SS + +GGGG +V + G G GE E +A+ K
Sbjct: 765 FDAGTTTSSCEIDATAGGGGRRKVRFDNDGGGGGEEEEEAAEVK 808
>02_04_0577 -
24011542-24011906,24012285-24012385,24013029-24013287,
24014176-24014264,24015331-24015419
Length = 300
Score = 30.7 bits (66), Expect = 2.6
Identities = 20/59 (33%), Positives = 24/59 (40%)
Frame = -3
Query: 581 WSGRTSTSCPSSRDKDECTRVCGCVRXRSALRRSGSPIPQPRE*TITSAEPPPPLSTSF 405
+ GR+ + P R R R RS RRS S P P S PPPP + F
Sbjct: 126 YRGRSRSRSPRYRRSPSYGRRSYSPRDRSPKRRSYSRSPPPARARSYSRSPPPPRAALF 184
>07_03_1709 -
28873172-28873327,28873519-28873584,28874067-28874127,
28875406-28875462,28876301-28876531,28876685-28876799,
28876897-28877136,28877222-28877316,28877406-28877585,
28877663-28877839,28877920-28878890
Length = 782
Score = 29.9 bits (64), Expect = 4.6
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 409 EVDSGGGGSAEVMVYSLGWGMGEP-ERRSA 495
E S GGG + Y+LGW G P RRSA
Sbjct: 188 ECRSPGGGDGGLFSYNLGWANGGPGHRRSA 217
>03_02_0731 -
10786122-10787018,10787859-10788449,10788659-10788740,
10789914-10790107
Length = 587
Score = 29.9 bits (64), Expect = 4.6
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -3
Query: 473 PIPQPRE*TITSAEPPPPLSTSFK*LEIEVPEEYGISESSTPGRVVRCAP 324
P+P+ A PPP + S L + YG+SE+ P V P
Sbjct: 328 PLPRVVNVMTAGAAPPPSVLASMSKLGFRITHTYGLSETYGPSTVCAWKP 377
>11_06_0217 -
21353558-21353660,21354680-21355510,21356340-21356464,
21356546-21357076,21357207-21357650,21358469-21358612
Length = 725
Score = 29.5 bits (63), Expect = 6.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 325 GAHRTTLPGVLDSDIPYSSGTSISSHLKEVDSGGGGSAEVM 447
G H LP V D + Y+ + + L+ V GGGG V+
Sbjct: 290 GCHHCLLPNVTDLTLRYALRMATRAALRAVVGGGGGVTAVL 330
>07_03_1090 +
23891294-23892222,23892317-23892516,23895241-23895482,
23895771-23896461,23896486-23896562
Length = 712
Score = 29.5 bits (63), Expect = 6.1
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 412 VDSGGGGSAEVMVYSLGWGMGEPERRSADRKRTQPHTLVHSSLSL 546
++SGGGG+ + G G+ ERR D KR Q ++ SL++
Sbjct: 321 LNSGGGGAGSSDPAARRGGSGKQERRLLDPKRLQNVAIMLKSLNV 365
>07_01_0134 +
977527-977757,977842-977937,978479-978519,979550-979661,
980100-980180,980502-980567
Length = 208
Score = 29.5 bits (63), Expect = 6.1
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 418 SGGGGSAEVMVYSLGWGMGEPERRSADRKRTQPHTLV 528
SGGGG+A L G P RR R R+ P +V
Sbjct: 9 SGGGGAAPEAQQQLSGGGDTPRRRRPTRSRSDPLLIV 45
>04_04_0274 - 24078653-24078889,24079701-24080027
Length = 187
Score = 29.5 bits (63), Expect = 6.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 343 LPGVLDSDIPYSSGTSISSHLKEVDSGGGGSAEVM 447
LPGV +++ YS G ++V GG G AEV+
Sbjct: 45 LPGVARTEVGYSQGHRHEPTYRDVCGGGTGHAEVV 79
>07_03_0266 -
16015949-16016524,16016746-16016782,16017274-16017884,
16018004-16018081,16018117-16018143
Length = 442
Score = 29.1 bits (62), Expect = 8.0
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +1
Query: 481 ERRSADRKRTQPHTLVHSSLSLDDGHEVDVLPLHNQVGGHTRLLVLNDSTVIK 639
+RRS DR+R +P + S++ D + V + L +G T + LN TV++
Sbjct: 8 QRRSMDRRRIRPDVEI-ESVADDSANYVQNIRLVIDIGDRTIQVPLNGHTVVQ 59
>03_05_0695 - 26851370-26851495,26852949-26853398
Length = 191
Score = 29.1 bits (62), Expect = 8.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 379 SGTSISSHLKEVDSGGGGSAEVMVYSLGWGMGEPERRSADRKR 507
+G SH ++ SG GG+ ++V +LG G E R R
Sbjct: 28 AGAGAESHRRDGSSGCGGAGPMVVLTLGSGAAAAEDDGGGRSR 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,192,933
Number of Sequences: 37544
Number of extensions: 407345
Number of successful extensions: 1310
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4038959244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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