Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_N10
         (1297 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    25   1.9  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    25   1.9  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
 Frame = -3

Query: 599 CPPT*LWS---GRTSTSCPSSRDKDECTRVC--GCVRXRSALR 486
           CP   ++S   GR    CP+   K  C ++C  GCV     LR
Sbjct: 37  CPSNEIFSRCDGRCQRFCPNVVPKPLCIKICAPGCVCRLGYLR 79


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
 Frame = -3

Query: 599 CPPT*LWS---GRTSTSCPSSRDKDECTRVC--GCVRXRSALR 486
           CP   ++S   GR    CP+   K  C ++C  GCV     LR
Sbjct: 37  CPSNEIFSRCDGRCQRFCPNVVPKPLCIKICAPGCVCRLGYLR 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,906
Number of Sequences: 438
Number of extensions: 4231
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44543373
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)