Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_N09
(1280 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 49 2e-06
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 48 4e-06
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 48 4e-06
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 42 1e-04
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 40 7e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 40 0.001
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 40 0.001
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 39 0.001
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 39 0.002
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 39 0.002
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 38 0.003
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 38 0.003
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 37 0.005
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 36 0.012
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 36 0.016
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 36 0.016
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 36 0.016
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 35 0.028
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 35 0.028
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 34 0.049
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 33 0.11
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 32 0.15
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 32 0.15
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 32 0.20
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.26
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 30 0.60
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 30 0.60
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.60
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 29 1.4
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 29 1.4
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 29 1.8
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 29 1.8
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 28 3.2
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 26 9.7
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 9.7
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 48.8 bits (111), Expect = 2e-06
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Frame = +1
Query: 169 DLSGKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAED 333
D K+Y+ NL N + ++ ++ +G++ + + +N GF F EF++P DAE
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEV 366
Query: 334 SVRGLDGTRCCGTRIRVEMS 393
++ GLDG G ++ + +
Sbjct: 367 AISGLDGKDTYGNKLHAQFA 386
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 47.6 bits (108), Expect = 4e-06
Identities = 26/73 (35%), Positives = 38/73 (52%)
Frame = +1
Query: 181 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 360
+++VG + A++ ++ F YG I + + GF FVE ED RDA D V G
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLMN---GFGFVEVEDARDARDIVNDFQGKE 61
Query: 361 CCGTRIRVEMSNG 399
G+RI VE + G
Sbjct: 62 FMGSRIVVEPARG 74
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 47.6 bits (108), Expect = 4e-06
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Frame = +1
Query: 175 SGKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVA-----RNPPGFAFVEFEDPRDAEDSV 339
S VYVGNL ++ +I +FSK G IR + + + P GF FVE+ + +DA DS+
Sbjct: 31 SNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSL 90
Query: 340 RGLDGTRCCGTRIRVEMSNG 399
+ + T IR ++ +G
Sbjct: 91 KYISRTSLDERIIRADLDHG 110
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 42.3 bits (95), Expect = 1e-04
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Frame = +1
Query: 184 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLD 351
V+VGNL + ++ + F +G I +V + R +AFVEF++P DA++++ ++
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 352 GTRCCGTRIRVEMSN 396
+ C IRV +N
Sbjct: 68 YSILCDRCIRVSPAN 82
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 39.9 bits (89), Expect = 7e-04
Identities = 20/81 (24%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Frame = +1
Query: 184 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV----------ARNPPGFAFVEFEDPRDAED 333
+YVGNL + ++ ++F +GN + +++P FAF+ FE+ A++
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 334 SVRGLDGTRCCGTRIRVEMSN 396
++ L+G+ G ++VE ++
Sbjct: 82 AIASLNGSSFQGNTLKVEYTH 102
Score = 36.3 bits (80), Expect = 0.009
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 7/64 (10%)
Frame = +1
Query: 184 VYVGNLGTN--ASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVR 342
++V NL N + ++E++FSK+G I++ +A P G+ FV F P +A ++
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
Query: 343 GLDG 354
L+G
Sbjct: 481 TLNG 484
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 39.5 bits (88), Expect = 0.001
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Frame = +1
Query: 157 YREWDLSGKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRD 324
Y S +YVGNL S + +F+ G++ +A P G F V+FE+ D
Sbjct: 273 YPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENEND 332
Query: 325 AEDSVRGLDGTRCCGTRIRVEMSN 396
A S+ L+G R G +++ ++
Sbjct: 333 AASSIEKLNGYRYGGRPLQLSYAH 356
Score = 35.5 bits (78), Expect = 0.016
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +1
Query: 181 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGF----AFVEFEDPRDAEDSVRGL 348
+VYVGNL +E+++ + GN+ N + P G A +E+ +A +++ L
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 126
Query: 349 DGTRCCGTRIRV 384
+ G + +
Sbjct: 127 SNQKFMGRLVYI 138
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 39.5 bits (88), Expect = 0.001
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +1
Query: 175 SGKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 348
S V++GNL ++ + EIE+ F K+G I ++ + + AFV F + RDA VR L
Sbjct: 298 SRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL-SKKNIAFVHFLNIRDAIKVVRTL 354
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 175 SGKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 348
S VY ++ + + E+E I +YG I ++ +N FV + + +A +V GL
Sbjct: 499 SRNVYFSHISDSLTTEELELILRQYGEIESIKYLKNRSS-GFVAYTNISNAMKAVNGL 555
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 39.1 bits (87), Expect = 0.001
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +1
Query: 184 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRGL 348
VYVGN+ ++ ++ IF + G +++ + + P G+ F E+ DP A +VR L
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 349 DGTRCCGTRIRVE 387
+ R+RV+
Sbjct: 67 NNYDAGTRRLRVD 79
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = +1
Query: 169 DLSGKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAED 333
+L ++V + + + E+++IFSK+G + +V + R P GF F+ F +A
Sbjct: 98 NLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATS 157
Query: 334 SVRGLDGTRCCGTRIRVE 387
++ L+ G + V+
Sbjct: 158 AIDNLNSQEFYGRVLNVQ 175
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Frame = +1
Query: 181 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN---------PPGFAFVEFEDPRDAED 333
+V+VG L T+ K EI +F G +R V + P G AFV F + D +
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 334 SVRGLDG 354
++ L+G
Sbjct: 105 AIETLNG 111
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 37.9 bits (84), Expect = 0.003
Identities = 21/84 (25%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Frame = +1
Query: 151 SRYREWDLSGKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFED 315
S ++++ S +Y+GNL + ++ +I +FS++G ++ + R+ GFAF+++ED
Sbjct: 22 SWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYED 81
Query: 316 PRDAEDSVRGLDGTRCCGTRIRVE 387
R +V + + +RV+
Sbjct: 82 QRSTVLAVDNMTNVKLLDRLVRVD 105
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 37.9 bits (84), Expect = 0.003
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +1
Query: 184 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 312
+YV NL S I +FS YGN++++W+ +P A V +E
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWML-SPDNSAIVSYE 43
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 37.1 bits (82), Expect = 0.005
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +1
Query: 181 KVYVGNLGTNASKYE-IEKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRG 345
++ + NL + K + +E FSK+G +R + + G FAFV +D + AE+++
Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNS 167
Query: 346 LDGTRCCGTRIRVE 387
L+GT G I V+
Sbjct: 168 LNGTEIDGRPIAVD 181
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 35.9 bits (79), Expect = 0.012
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +1
Query: 184 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-PGFAFVEFEDPRDAEDSVRGLDGTR 360
V+VG L S+ E++ +F +G I V+V P G FV+F + + AE ++ L G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYP 362
Query: 361 CCGTRIRV 384
+RIR+
Sbjct: 363 LGNSRIRL 370
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 35.5 bits (78), Expect = 0.016
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +1
Query: 184 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDP 318
VYVGN+ + + E++ F+ G++ V + +P GFA++EF +P
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEP 106
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 35.5 bits (78), Expect = 0.016
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 169 DLSGKVYVGNLGTNASKYEIEKIFSKYGNIRNVW 270
D S +YVGN+ + S EI K FSKYG + +++
Sbjct: 14 DESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIF 47
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 35.5 bits (78), Expect = 0.016
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Frame = +1
Query: 169 DLSGKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR--NPPG----FAFVEFEDPRDAE 330
+L ++YVG L ++ ++E FS++G++ N+ + P G FA++ F D
Sbjct: 2 ELEKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKW 61
Query: 331 DSVRG-LDGTRCCGTRIRVE 387
+ L G+++R+E
Sbjct: 62 QKCKSYLSNATFKGSKLRIE 81
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 34.7 bits (76), Expect = 0.028
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +1
Query: 181 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 345
++++ NL + ++ +++ +F +G + V + NP GFA+++F D DA +
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 346 LDGTRCCGTRIRV 384
LD G + V
Sbjct: 384 LDAKPFQGRLLHV 396
Score = 32.7 bits (71), Expect = 0.11
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Frame = +1
Query: 184 VYVGNLGTNASKYEIEKIFSKY-GNIRNVWVARNPP---------GFAFVEFEDPRDAED 333
+YV NL + + E +K+F G + V A+ P GF FVEF+D A
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680
Query: 334 SVRGLDGTRCCGTRIRVEMSN 396
++ ++G G ++ +++S+
Sbjct: 681 AMHAMNGFVLDGHKLEIKLSH 701
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 34.7 bits (76), Expect = 0.028
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Frame = +1
Query: 163 EWDLSG-KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFED 315
EWD + +++VGNLG + + + + FS+Y ++ V R+ GF FV F+D
Sbjct: 24 EWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKD 79
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 33.9 bits (74), Expect = 0.049
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +1
Query: 184 VYVGNLGTNASKYEIEKIFS-KYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 360
+YVGNL + S+ E++ +FS + G R + + FVEFE+ A ++++ L G
Sbjct: 428 IYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIPYAMEALKNLQGV- 486
Query: 361 CCGTRIR 381
C + I+
Sbjct: 487 CLSSSIK 493
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 32.7 bits (71), Expect = 0.11
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = +1
Query: 184 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFED 315
V+VGNL A + + + F G+I V + R+P GFA+++F+D
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKD 320
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 32.3 bits (70), Expect = 0.15
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +1
Query: 184 VYVGNLG-TNASKYEIEKIFSKYGNIRNVWVAR--NPPGFAFVEFEDPRDAEDSVRG 345
++VG L N + Y + +FSKYG + + + P FAF+ F+ + A +V G
Sbjct: 367 IFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYAAVCG 423
Score = 27.9 bits (59), Expect = 3.2
Identities = 18/74 (24%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Frame = +1
Query: 184 VYVGNLGTNASKYE----IEKIFSKYGNIRNVWVARN--PPGFAFVEFEDPRDAEDSVRG 345
++V +L ++ S+ E ++ F ++G + +V V ++ ++FV+F++ DA ++
Sbjct: 81 LFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKDWLQRPYSFVQFQNTDDASKALSE 140
Query: 346 LDGTRCCGTRIRVE 387
T G IR+E
Sbjct: 141 AQNTILDGRHIRIE 154
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 32.3 bits (70), Expect = 0.15
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 292 FAFVEFEDPRDAEDSVRGLDGTR 360
FAFVE+ED RDAED+ + G R
Sbjct: 49 FAFVEYEDSRDAEDAYYEVHGRR 71
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 31.9 bits (69), Expect = 0.20
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = +1
Query: 184 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 348
V+VG L N + + F +YG I V + G+ +V+FE P A+ +V
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 349 DGTRCCGTRIRVEMSN 396
G + +++SN
Sbjct: 325 GTKEIDGRMVNLDLSN 340
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 31.5 bits (68), Expect = 0.26
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +1
Query: 124 PPFSIKTKMSRYREWDLSGKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----- 288
P ++K+K + + D ++VGNL ++S ++ F + G + +V + +
Sbjct: 74 PHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQK 133
Query: 289 GFAFVEFEDPR 321
G+AFVEF +P+
Sbjct: 134 GYAFVEFINPK 144
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 30.3 bits (65), Expect = 0.60
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 229 EKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 348
E+ KYG + ++ V N G FV+FE+ AE ++ GL
Sbjct: 535 EECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGL 574
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 30.3 bits (65), Expect = 0.60
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +1
Query: 181 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR---NPPGFAFVEFEDPRDAEDSV 339
++YV N+ ++ ++E F YG + +V + + GF +V +DAE+++
Sbjct: 758 ELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENAL 813
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +1
Query: 184 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVA----RNPPGFAFVEFEDPRDAEDSVR 342
+YV N + +I K+FS YGN+ +V F +V+ P +A ++++
Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNALQ 724
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 30.3 bits (65), Expect = 0.60
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +1
Query: 184 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 360
++VGNL + S + FS YG + ++ + + AF+ F+ A+ + L+G R
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHS-AFLNFDSVETAKHVLEELNGKR 646
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 29.1 bits (62), Expect = 1.4
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +1
Query: 184 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG-----FAFVEFEDPRDAEDSVRGL 348
++V L ++E IFS++G I + V R+ +AF+EF++ E + +
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
Query: 349 DGTRCCGTRIRVEMS 393
+RI V+ S
Sbjct: 306 QNVLIDDSRIHVDFS 320
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 29.1 bits (62), Expect = 1.4
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +1
Query: 148 MSRYREWDLSGKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFE 312
MS + + +Y+GNL + + ++ + G + N+ + R+ GF F EF
Sbjct: 1 MSIREDRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFL 60
Query: 313 DPRDAEDSVRGLDGTRCCGTRIRVEMSN 396
+D E + + L+ + G IRV ++
Sbjct: 61 HEQDVEYACQILNQVKLFGKPIRVNRAS 88
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Frame = +1
Query: 133 SIKTKMSRYREWDLS-GKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGF 294
+IK K+S + G +YVG L + ++ FS++G + + ++RN +
Sbjct: 89 TIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHY 148
Query: 295 AFVEFE 312
AF+EFE
Sbjct: 149 AFIEFE 154
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Frame = +1
Query: 178 GKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPR 321
GK+++G L + + F ++G + + V R+ GF F+ F++P+
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPK 215
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 27.9 bits (59), Expect = 3.2
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +1
Query: 184 VYVGNLGTNASKYEIEKIFSKYGNIRNVW--VARNPPGFAFVEFEDPRDAEDSVRGLDG 354
+YVGNL + ++ FSK R + + N P FVEFE+ A ++ + G
Sbjct: 604 IYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSP-MCFVEFEEVCHAAKAMEKMQG 661
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 686 VALLLAIVYKLLHTHFHMYTLKTISLSHCSSKICTTSQYLVLLS 555
+++ + IV LL + F+ Y+L S I T S ++ LLS
Sbjct: 107 ISVYIGIVISLLVSLFYFYSLPNFPYSKTCIFIYTVSSFIELLS 150
>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 122
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +2
Query: 140 KLRCLATENGIFLAKCT---WATWVLMRLNMK*KKYF 241
KL +AT + IF + W+TWVL R +K +F
Sbjct: 5 KLANVATVDAIFAISSSTFLWSTWVLQRTILKRPNFF 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,060,892
Number of Sequences: 5004
Number of extensions: 57022
Number of successful extensions: 188
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 697499478
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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