Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_N08
(1430 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0904 + 20717005-20718087 42 0.001
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 36 0.078
12_02_1174 - 26696869-26698191 32 0.96
06_03_0905 + 25843547-25844314 31 2.9
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 6.8
02_01_0302 - 2021221-2023305 29 9.0
>04_03_0904 + 20717005-20718087
Length = 360
Score = 42.3 bits (95), Expect = 0.001
Identities = 56/237 (23%), Positives = 61/237 (25%), Gaps = 7/237 (2%)
Frame = -2
Query: 1402 TPXPXPPXXXKXXXPXPYPXPXXTTXTXXXXNPXTXXXXPNXXXXNPQHXXXXXPPPXXT 1223
TP P PP P P P P T P P PQ P P
Sbjct: 138 TPTPTPP----TYKPQPKPTPPPTYKPQPKPTPTPYTPTPTPPSYKPQ--PKPTPTPYTP 191
Query: 1222 HNXPXXHXXXXXQXTXPXXXNXXPXXXRXPPK---XXTXKXXHXXXPXXXTXXXPXTPKX 1052
P + P P + PK T K P P T K
Sbjct: 192 TPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPNPPPTYKPQPKPNPPPTYKPAPPTYK- 250
Query: 1051 XXPXXQXNTXXXPNXXXTPPXXPPKXXXPHXXXXP-XTXHXPXXNTNXPIXXPXXPXPPX 875
P P TP P P P T + P N P P P
Sbjct: 251 PQPKPNPPPTYKPQPKPTPTPYTPPTYKPQPKPTPTPTPYTPTPKPNPPPTYKPQPKPTP 310
Query: 874 XXQTXQXQXRXXXXXPXXPXPXIXKXTXYPXXLAQTPXXTPP---XXPKXTPSTCPP 713
+ Q + P P K T P TP TPP P TP PP
Sbjct: 311 TPTPYKPQPK------PTPSPYTPKPTPTPP--TYTPTPTPPYHKPPPSYTPGPPPP 359
Score = 38.7 bits (86), Expect = 0.011
Identities = 47/230 (20%), Positives = 52/230 (22%), Gaps = 1/230 (0%)
Frame = -2
Query: 1399 PXPXPPXXXKXXXPXPYPXPXXTTXTXXXXNPXTXXXXPNXXXXNPQHXXXXXPPPXXTH 1220
P P PP P P P T P T P P P +
Sbjct: 78 PTPTPPTYTPTPKPTPPPYTPKPTPPAHTPTPPTYTPTPTPPKPTPPTYKPQPKPTPAPY 137
Query: 1219 NXPXXHXXXXXQXTXPXXXNXXPXXXRXPPKXXTXKXXHXXXPXXXTXXXPXTPKXXXPX 1040
Q P P P P TP P
Sbjct: 138 TPTPTPPTYKPQPKPTPPPTYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPTPTPPS 197
Query: 1039 XQXNTXXXPNXXXTPPXXPPKXXXPHXXXXPXTXHXPXXNTNXPIXXPXXPXPPXXXQTX 860
+ P TP PP P P + P N P P PP T
Sbjct: 198 YKPQPKPTPT-PYTPTPTPPS-YKPQPKPNPPPTYKPQPKPNPP--PTYKPAPP----TY 249
Query: 859 QXQXRXXXXXPXXPXPXIXKXTXYPXXLAQTPXXTPPXXP-KXTPSTCPP 713
+ Q + P P P P TP P TP PP
Sbjct: 250 KPQPKPNPPPTYKPQPKPTPTPYTPPTYKPQPKPTPTPTPYTPTPKPNPP 299
Score = 37.9 bits (84), Expect = 0.019
Identities = 28/103 (27%), Positives = 29/103 (28%), Gaps = 2/103 (1%)
Frame = -2
Query: 1015 PNXXXTPPXXPPKXXXPHXXXXPXTXHXPXXNTNXP--IXXPXXPXPPXXXQTXQXQXRX 842
P+ P PPK P P P T P P P P T
Sbjct: 54 PHHHEPKPEKPPKEHKPPAYTPPKPTPTPPTYTPTPKPTPPPYTPKPTPPAHTPTPPTYT 113
Query: 841 XXXXPXXPXPXIXKXTXYPXXLAQTPXXTPPXXPKXTPSTCPP 713
P P P K P TP TPP K P PP
Sbjct: 114 PTPTPPKPTPPTYKPQPKPTPAPYTPTPTPPTY-KPQPKPTPP 155
Score = 35.5 bits (78), Expect = 0.10
Identities = 37/147 (25%), Positives = 38/147 (25%), Gaps = 6/147 (4%)
Frame = -2
Query: 1135 PPKXXTXKXXHXXXPXXXTXXXPXTPKXXXPXXQXNTXXX--PNXXXTPPXXPPKXXXP- 965
PPK K H P P P T P TPP PK P
Sbjct: 47 PPKEH--KPPHHHEPKPEKPPKEHKPPAYTPPKPTPTPPTYTPTPKPTPPPYTPKPTPPA 104
Query: 964 HXXXXPXTXHXPXXNTNXPIXXPXXPXPPXXXQTXQXQXRXXXXXPXXPXPXIXKXTXYP 785
H P P P P P T P P K P
Sbjct: 105 HTPTPPTYTPTPTPPKPTPPTYKPQPKPTPAPYTPTPTPPTYKPQPKPTPPPTYKPQPKP 164
Query: 784 XXLAQTPXXTPP---XXPKXTPSTCPP 713
TP TPP PK TP+ P
Sbjct: 165 TPTPYTPTPTPPSYKPQPKPTPTPYTP 191
Score = 31.9 bits (69), Expect = 1.3
Identities = 19/68 (27%), Positives = 21/68 (30%)
Frame = -3
Query: 795 PXTPXXSXKPPXXXPXXXQNXPXQHAPPAXXXXPXLQTAXXQXXXPKNSPXKPQXXPPXT 616
P P KPP + P +H PPA P T P P P P T
Sbjct: 44 PEKPPKEHKPPHHHEPKPEKPPKEHKPPA--YTPPKPTPTPPTYTPTPKPTPPPYTPKPT 101
Query: 615 QXRXTNXP 592
T P
Sbjct: 102 PPAHTPTP 109
Score = 29.9 bits (64), Expect = 5.1
Identities = 25/97 (25%), Positives = 26/97 (26%)
Frame = -2
Query: 1000 TPPXXPPKXXXPHXXXXPXTXHXPXXNTNXPIXXPXXPXPPXXXQTXQXQXRXXXXXPXX 821
TP PK P P H P P PP T P
Sbjct: 36 TPVKPAPKPEKPPKEHKPPHHHEPKPEKPPKEHKPPAYTPPKPTPTPPTYTPTPKPTPPP 95
Query: 820 PXPXIXKXTXYPXXLAQTPXXTPPXXPKXTPSTCPPR 710
P P TP TP PK TP T P+
Sbjct: 96 YTPKPTPPAHTPTPPTYTPTPTP---PKPTPPTYKPQ 129
>10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 35.9 bits (79), Expect = 0.078
Identities = 39/177 (22%), Positives = 43/177 (24%), Gaps = 3/177 (1%)
Frame = -2
Query: 1399 PXPXPPXXXKXXXPXPYPXPXXTTXTXXXXNPXTXXXXPNXXXXNPQHXXXXXPPPXXTH 1220
P P PP P P P P P P P H PPP
Sbjct: 587 PPPPPPPLPNCLVPSPPPPPPPPPILPNRSVPPPPPPPPPL----PNHSVLPPPPPPPP- 641
Query: 1219 NXPXXHXXXXXQXTXPXXXNXXPXXXRXPPKXXTXKXXHXXXPXXXTXXXPXTPKXXXPX 1040
P P N P PP + P P P
Sbjct: 642 -PPSLPNRLVPPPPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPPA 700
Query: 1039 XQXNTXXXPNXXXTPPXXPP--KXXXPHXXXXPXTXHXP-XXNTNXPIXXPXXPXPP 878
+ N P+ PP PP + P P P N P P P PP
Sbjct: 701 NRTNGPGVPSAPPPPPPPPPANRSNGPSAPAPPLPPPLPAAANKRNP---PAPPPPP 754
>12_02_1174 - 26696869-26698191
Length = 440
Score = 32.3 bits (70), Expect = 0.96
Identities = 39/183 (21%), Positives = 41/183 (22%), Gaps = 7/183 (3%)
Frame = -2
Query: 1240 PPPXXT-------HNXPXXHXXXXXQXTXPXXXNXXPXXXRXPPKXXTXKXXHXXXPXXX 1082
PPP T H P P P R P P
Sbjct: 126 PPPPRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSL 185
Query: 1081 TXXXPXTPKXXXPXXQXNTXXXPNXXXTPPXXPPKXXXPHXXXXPXTXHXPXXNTNXPIX 902
P P P P P PP P P T P
Sbjct: 186 QPPSPPPPPPTRPPSVKPPVVQPKPQPPPTLPPPSPPPPPPTVPPRT---PGDTPAVVEP 242
Query: 901 XPXXPXPPXXXQTXQXQXRXXXXXPXXPXPXIXKXTXYPXXLAQTPXXTPPXXPKXTPST 722
P P PP + P P P Y A TP P PK P +
Sbjct: 243 KPQPPPPPPRAPVKMPRVLEPKPSPPPPSPLPPPPEDYWSPTAVTP--PEPTKPKPPPPS 300
Query: 721 CPP 713
PP
Sbjct: 301 PPP 303
Score = 31.5 bits (68), Expect = 1.7
Identities = 27/120 (22%), Positives = 31/120 (25%)
Frame = -2
Query: 1069 PXTPKXXXPXXQXNTXXXPNXXXTPPXXPPKXXXPHXXXXPXTXHXPXXNTNXPIXXPXX 890
P P P + P PP P P P + P+ P
Sbjct: 121 PVPPPPPPPRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPPPPPRPP-SVKPPVVQPKP 179
Query: 889 PXPPXXXQTXQXQXRXXXXXPXXPXPXIXKXTXYPXXLAQTPXXTPPXXPKXTPSTCPPR 710
PP Q P P + P Q P PP P P T PPR
Sbjct: 180 QPPP------SLQPPSPPPPPPTRPPSVKPPVVQPKP--QPPPTLPPPSPPPPPPTVPPR 231
>06_03_0905 + 25843547-25844314
Length = 255
Score = 30.7 bits (66), Expect = 2.9
Identities = 29/135 (21%), Positives = 33/135 (24%)
Frame = -2
Query: 1132 PKXXTXKXXHXXXPXXXTXXXPXTPKXXXPXXQXNTXXXPNXXXTPPXXPPKXXXPHXXX 953
P + H P T P P P + P P PPK P
Sbjct: 43 PSHPSPSPGHPKGPKNPTPRPPKGPTYPSPVTRPPPLVAP--PKVPVTHPPKG--PVTRP 98
Query: 952 XPXTXHXPXXNTNXPIXXPXXPXPPXXXQTXQXQXRXXXXXPXXPXPXIXKXTXYPXXLA 773
P T P T + P P T P P YP
Sbjct: 99 PPVTYPTPPVTTPPVVVGPPVTYPTPPVTTPPVVVGPPVTYPTPPVTYPTPPVTYPTPPT 158
Query: 772 QTPXXTPPXXPKXTP 728
TP PP + P
Sbjct: 159 TTPCPPPPPATQRCP 173
>08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.5 bits (63), Expect = 6.8
Identities = 24/104 (23%), Positives = 26/104 (25%), Gaps = 3/104 (2%)
Frame = -2
Query: 1015 PNXXXTPPXXPPKXXXPHXXXXPXTXHXPXXNTNXPIXXPXXPXPPXXXQTXQXQXRXXX 836
P P PP P P P P P P PP Q
Sbjct: 20 PQPPPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQ 79
Query: 835 XXPXXPXPXIXKXTXYPXXL---AQTPXXTPPXXPKXTPSTCPP 713
P P + P + P PP P PS PP
Sbjct: 80 QQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPP 123
>02_01_0302 - 2021221-2023305
Length = 694
Score = 29.1 bits (62), Expect = 9.0
Identities = 30/153 (19%), Positives = 39/153 (25%)
Frame = -2
Query: 1423 PXNXXXXTPXPXPPXXXKXXXPXPYPXPXXTTXTXXXXNPXTXXXXPNXXXXNPQHXXXX 1244
P TP P K P +P P +T T +P + P+ H
Sbjct: 460 PGGSSSTTPSYPSPNGGKPSTPS-HPSPPGST-TPSYPSPPSSSTTPSYHSPPQGHTTPS 517
Query: 1243 XPPPXXTHNXPXXHXXXXXQXTXPXXXNXXPXXXRXPPKXXTXKXXHXXXPXXXTXXXPX 1064
P P + P H T P + PP P P
Sbjct: 518 HPSPPSSSTAPPSHSPPQSTPTHPSYPSPPVTYTPPPPTSADRPDVRFAPPPGSYGPIPS 577
Query: 1063 TPKXXXPXXQXNTXXXPNXXXTPPXXPPKXXXP 965
TP ++ P P PP P
Sbjct: 578 TPPSSGSPPSPSSGYQP-PSGQPGASPPTQHVP 609
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,052,396
Number of Sequences: 37544
Number of extensions: 211621
Number of successful extensions: 725
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4536424228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -