Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_N06
         (1347 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...   145   1e-35
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    29   1.1  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    27   5.9  
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    27   5.9  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    27   7.8  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score =  145 bits (352), Expect = 1e-35
 Identities = 80/173 (46%), Positives = 112/173 (64%), Gaps = 1/173 (0%)
 Frame = +1

Query: 121 MKIYKDIITGDEMFSDT*XMKLVDEVIYEVXGRLVTRAQG-DIQIEGFNPSAEEADEGTD 297
           M +YKD+I+GDE+ SD   +K VD+++YE   ++VT  QG D+ I G NPSAE+A+E  +
Sbjct: 1   MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAE 59

Query: 298 SAVESGVDIVLNHRXVETXAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVXKXNMNKV 477
              E+  ++V + R   T +F DKKSY  Y+K YMK + A+L+E  P++V V + N    
Sbjct: 60  EGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGF 117

Query: 478 MKDILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFKXGLXEEKF 636
           +K IL  FK+  F+ GESMD D MV +M YR+ DG   P M+FFK GL  EKF
Sbjct: 118 VKKILANFKDYDFYIGESMDPDAMVVLMNYRE-DGI-TPYMIFFKDGLVSEKF 168


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 253 EGFNPSAEEADEGTDSAVESGVDIVLNHRXVETXAFGDKKSYTLYL 390
           + F    EE +E  +   E  +D VLNHR        D KS   YL
Sbjct: 188 DDFEDEEEEVEEQVEEEYEPIIDFVLNHRKRADAQDDDPKSSYQYL 233


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 316 VDIVLNHRXVETXAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVE 450
           +D V  ++ +E   F ++K  T+YLK   + L  K +   PD VE
Sbjct: 89  IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVE 131


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 223 VTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRXVETXAFGD 366
           +T   G  Q + F PS  E +E TD+ ++  V  ++    V    F D
Sbjct: 6   LTEVWGKPQKDIFFPSGSEVEESTDAPIQRTVQPIVTGSSVLALKFAD 53


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 348 FDXP-VVQDYVNSALDGRVRALVSLFSRRIKTLDLDIT 238
           +D P V++D +NS LDG +  +    S R +T  LD++
Sbjct: 336 WDVPNVLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLS 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,399,066
Number of Sequences: 5004
Number of extensions: 52373
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 741217394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)