Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_N05
         (1314 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...   213   3e-56
SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   1.1  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    27   5.7  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    27   7.6  

>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score =  213 bits (521), Expect = 3e-56
 Identities = 105/240 (43%), Positives = 151/240 (62%), Gaps = 2/240 (0%)
 Frame = +2

Query: 218 CYTLINFPTDLEPCNEMQLKLDLEKGDTKKKIEALKKTIGIILSGEKIPGLLMIIIRFVL 397
           C+TL+     LE  +   LK  LE  +   KI A+K  + ++++G+ +P +LM +IRFV+
Sbjct: 3   CWTLVQ-QDFLEAPSVDALKTSLESKNDYVKISAMKTILRVVINGDSLPSILMHVIRFVM 61

Query: 398 PLQDHMIKKLLLIFWEIVPKTSPDGKLLQEMILVCDAYRKDLQHPNEFIRGSTLRFLCXX 577
           P ++  +KKLL  +WE+ PK + DG + QEMIL C+++R DLQHPNEFIRG+TLRFLC  
Sbjct: 62  PSRNKELKKLLYYYWEVCPKYNNDGTMKQEMILACNSFRNDLQHPNEFIRGATLRFLCKL 121

Query: 578 XXXXXXXXXMPAIRACLEHRHSYVRRNAVLAIFTIYRNFEFLIPDAPELVANFLETEQDM 757
                    +P +R CLEHRH+YVR+NA+LA+F+IY+    LIPDA  L  +FL  E + 
Sbjct: 122 KEPELLDPLIPTVRQCLEHRHAYVRKNAILAVFSIYQVSNHLIPDAASLAEDFLAAESEG 181

Query: 758 SCKRNAFLMLLHADQERALTYLSSRLDNVHSFGDILQLVIVELIYKVCHTNPS--ERSRF 931
           +CKRNA ++L   D E+A  +L +  + + S      LVI+E I KV  T     E+ RF
Sbjct: 182 TCKRNALIVLFTIDPEKAKAWLLANFEQIPSLNASSLLVIIEFIRKVVLTKADGLEKLRF 241


>SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +3

Query: 654 GMLFLLFLPYIGTLNS*FLMHR--SW*QTSWRLSKTCLASVMPSSCCCM 794
           G++FLL L Y+ ++ +  LMH       T  +++KTCL +V+  + C M
Sbjct: 31  GIVFLLVLSYLFSIEAETLMHDLVGSGLTGKQVAKTCLGAVVIYAVCLM 79


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -1

Query: 402  NGNTNLIMIMSRPGIFSPESIIPIVFFNASIFFFVSPFSRSSLSCISLHG 253
            +GNTN  +I S+  +++     P VF N    FF   F     S IS++G
Sbjct: 1362 DGNTNEQIISSKLTVYASR-YAPDVFLNLGSLFFPFIFFGKHSSSISING 1410


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 200 AVVEQP-CYTLINFPTDLEPCNEMQLKLDLEKGD 298
           A+V+ P C+ L +    L PC EM+L +D E+G+
Sbjct: 442 AMVQNPACFNLDDSAGSLLPCTEMKL-VDCEEGN 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,109,831
Number of Sequences: 5004
Number of extensions: 82593
Number of successful extensions: 232
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 719358436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)