Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_N05
(1314 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365... 221 1e-57
01_01_1236 - 10020837-10021041,10021746-10021831,10022552-100230... 217 2e-56
03_02_1035 - 13557425-13557721,13557855-13558058,13558143-135583... 47 4e-05
01_06_1795 - 39925019-39926029,39926265-39926408,39927200-399272... 33 0.38
02_05_1134 - 34352154-34352375,34353683-34353746,34353820-343548... 31 2.0
06_01_0475 + 3375757-3375800,3375898-3376168,3376252-3376440,337... 29 6.2
>11_01_0471 -
3648871-3649078,3649841-3649926,3650111-3650155,
3650306-3650815,3651700-3653757
Length = 968
Score = 221 bits (539), Expect = 1e-57
Identities = 113/255 (44%), Positives = 165/255 (64%), Gaps = 4/255 (1%)
Frame = +2
Query: 206 VEQPCYTLINFPTDLEPCNEMQLKLDLEKGDTKKKIEALKKTIGIILSGEKIPGLLMIII 385
+E+PC L++F P ++K DLE D K++A+K+ I ++L+GE +P L + ++
Sbjct: 1 MEKPCTLLVHFDKG-SPSMANEIKADLEGSDVAAKVDAMKRAIMLLLNGETLPHLFITVV 59
Query: 386 RFVLPLQDHMIKKLLLIFWEIVPKTS-PDGKLLQEMILVCDAYRKDLQHPNEFIRGSTLR 562
R+VLP +DH I+KLLL++ EIV K GK+L EMIL+C R +LQHPNE+IRG TLR
Sbjct: 60 RYVLPSEDHTIQKLLLLYLEIVDKRDVASGKVLPEMILICQNLRNNLQHPNEYIRGVTLR 119
Query: 563 FLCXXXXXXXXXXXMPAIRACLEHRHSYVRRNAVLAIFTIYR--NFEFLIPDAPELVANF 736
FLC +P+I A L+HRH ++RR+A+ AI IYR + + L+PDAPE+V
Sbjct: 120 FLCRLNEPELLEPLIPSILANLDHRHHFIRRHALSAISAIYRLPHGDQLLPDAPEVVERA 179
Query: 737 LETEQDMSCKRNAFLMLLHADQERALTYLSSRLDNVHSFGDILQLVIVELIYKVCHT-NP 913
L EQD S +RN FLML QERA+ YL + + V + D+LQ+ V+LI KVC + N
Sbjct: 180 LTGEQDASARRNGFLMLCACAQERAVAYLLTNAERVAEWPDLLQMAAVDLIRKVCRSPNR 239
Query: 914 SERSRFIRTXYGLLA 958
+++ R+I+ LL+
Sbjct: 240 ADKGRYIKIIISLLS 254
>01_01_1236 -
10020837-10021041,10021746-10021831,10022552-10023061,
10023914-10025965
Length = 950
Score = 217 bits (529), Expect = 2e-56
Identities = 110/254 (43%), Positives = 163/254 (64%), Gaps = 3/254 (1%)
Frame = +2
Query: 206 VEQPCYTLINFPTDLEPCNEMQLKLDLEKGDTKKKIEALKKTIGIILSGEKIPGLLMIII 385
+E+P L++F ++K DLE D K++A+K+ + ++L+GE +P L + ++
Sbjct: 1 MEKPSTLLVHFDKG-SAAMAGEIKADLEGSDVAAKVDAMKRAVMLLLNGETLPTLFITVV 59
Query: 386 RFVLPLQDHMIKKLLLIFWEIVPKTSPDGKLLQEMILVCDAYRKDLQHPNEFIRGSTLRF 565
R+VLP +DH I+KLLL++ EI+ K G+ L EMIL+C R +L HPNE+IRG TLRF
Sbjct: 60 RYVLPSEDHTIQKLLLLYLEIIDKRDAAGRGLPEMILICQNLRNNLHHPNEYIRGVTLRF 119
Query: 566 LCXXXXXXXXXXXMPAIRACLEHRHSYVRRNAVLAIFTIYR--NFEFLIPDAPELVANFL 739
LC +P+I L+HRH ++RR+A+ AI +IYR + + L+PDAPELV L
Sbjct: 120 LCRLSEPEVLEPLVPSILENLDHRHHFIRRHALSAISSIYRLPHGDQLVPDAPELVERAL 179
Query: 740 ETEQDMSCKRNAFLMLLHADQERALTYLSSRLDNVHSFGDILQLVIVELIYKVCHT-NPS 916
+EQD S +RNAFLML QERA+ YL S D V + D+LQ+ V+LI KVC + N +
Sbjct: 180 ASEQDASARRNAFLMLCTCAQERAVAYLLSNADRVAEWPDLLQMAAVDLIRKVCRSPNRA 239
Query: 917 ERSRFIRTXYGLLA 958
++ R+I+ LL+
Sbjct: 240 DKGRYIKIIIALLS 253
>03_02_1035 -
13557425-13557721,13557855-13558058,13558143-13558332,
13558450-13558841,13558931-13559023,13559297-13559500,
13559572-13559635,13559760-13559806,13559825-13559971,
13560243-13560335,13560420-13560599,13560993-13561128,
13561216-13561466,13561556-13561669,13561794-13561991,
13562050-13562110,13562921-13563210
Length = 986
Score = 46.8 bits (106), Expect = 4e-05
Identities = 37/160 (23%), Positives = 69/160 (43%)
Frame = +2
Query: 305 KKIEALKKTIGIILSGEKIPGLLMIIIRFVLPLQDHMIKKLLLIFWEIVPKTSPDGKLLQ 484
K+ +A+KK I + G+ + L ++ + ++ +KKL+ ++ K+ PD
Sbjct: 119 KRKDAVKKVIAAMTVGKDVSSLFTDVVN-CMQTENLELKKLVYLYLINYAKSQPD----- 172
Query: 485 EMILVCDAYRKDLQHPNEFIRGSTLRFLCXXXXXXXXXXXMPAIRACLEHRHSYVRRNAV 664
IL + + KD Q PN IR +R + ++ CL+ YVR+ A
Sbjct: 173 LAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAA 232
Query: 665 LAIFTIYRNFEFLIPDAPELVANFLETEQDMSCKRNAFLM 784
+ + +Y L+ D FLE +D+ N ++
Sbjct: 233 ICVAKLYDINAELVED-----RGFLEALKDLISDNNPMVV 267
>01_06_1795 -
39925019-39926029,39926265-39926408,39927200-39927277,
39927722-39927838,39927925-39927981,39928492-39928623,
39928725-39928922,39929364-39929474,39929570-39929785,
39929879-39930064,39930590-39931192
Length = 950
Score = 33.5 bits (73), Expect = 0.38
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = +2
Query: 488 MILVCDAYRKDLQHPNEFIRGSTLRFLCXXXXXXXXXXXMPAIRACLEHRHSYVRRNAVL 667
+ILV + +KDL+ N + + L C +P + L H VR+ AV+
Sbjct: 120 VILVVNTIQKDLRSDNYLVVCAALTAACRLIGEEAIPAVLPQVVELLAHPKEAVRKKAVM 179
Query: 668 AIFTIYRNFEFLIPDAPELVANF 736
A+ Y+ LV+NF
Sbjct: 180 ALHRFYQRSP---SSVSHLVSNF 199
>02_05_1134 -
34352154-34352375,34353683-34353746,34353820-34354859,
34355193-34355261,34355502-34355606,34355992-34356161,
34356244-34356351,34356397-34356525,34356577-34356681,
34357186-34357475,34357575-34357679,34358195-34358289,
34358474-34358569,34358660-34358782,34359120-34359174,
34359254-34359417,34359881-34359971,34360180-34360334,
34360823-34361002,34361314-34361487,34361776-34361917,
34362023-34362325,34362443-34362522
Length = 1354
Score = 31.1 bits (67), Expect = 2.0
Identities = 21/84 (25%), Positives = 34/84 (40%)
Frame = +2
Query: 488 MILVCDAYRKDLQHPNEFIRGSTLRFLCXXXXXXXXXXXMPAIRACLEHRHSYVRRNAVL 667
++LV ++ ++DL H N+FI G L L P + + R ++ A L
Sbjct: 119 LMLVTNSLKQDLNHSNQFIVGLALCALGNICSAEMARDLSPEVERLMRSRDVNTKKKAAL 178
Query: 668 AIFTIYRNFEFLIPDAPELVANFL 739
I R P+L NF+
Sbjct: 179 CAIRIVRK-------VPDLAENFM 195
>06_01_0475 +
3375757-3375800,3375898-3376168,3376252-3376440,
3376816-3376989,3378039-3378218,3378565-3378719,
3379509-3379599,3380023-3380186,3380791-3380845,
3380944-3381066,3381160-3381255,3381706-3381833,
3382407-3382466,3382607-3382896,3383127-3383237,
3383318-3383395,3383487-3383659,3384192-3384296,
3385017-3385112
Length = 860
Score = 29.5 bits (63), Expect = 6.2
Identities = 24/85 (28%), Positives = 34/85 (40%)
Frame = +2
Query: 485 EMILVCDAYRKDLQHPNEFIRGSTLRFLCXXXXXXXXXXXMPAIRACLEHRHSYVRRNAV 664
E ++V +A R DL H N+FI G L L P + L+ R ++ A
Sbjct: 112 EHLVVLNADR-DLNHSNQFIVGLALCALGNICSAEMARDLSPEVERLLQSREPNTKKKAA 170
Query: 665 LAIFTIYRNFEFLIPDAPELVANFL 739
L I R P+L NF+
Sbjct: 171 LCSIRIVRK-------VPDLAENFM 188
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,048,834
Number of Sequences: 37544
Number of extensions: 530827
Number of successful extensions: 1228
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4108797156
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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