Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_N05
(1314 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125459-7|AAD12836.1| 971|Caenorhabditis elegans Hypothetical ... 367 e-101
AC024202-5|AAP86609.1| 827|Caenorhabditis elegans C. elegans AP... 52 1e-06
AC024202-3|AAF36038.2| 955|Caenorhabditis elegans C. elegans AP... 52 1e-06
Z83122-10|CAB05601.1| 896|Caenorhabditis elegans Hypothetical p... 50 3e-06
Z83122-9|CAB05598.1| 906|Caenorhabditis elegans Hypothetical pr... 50 3e-06
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 31 1.8
AC024790-1|AAK84609.1| 315|Caenorhabditis elegans Hypothetical ... 30 4.2
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ... 29 9.6
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein. 29 9.6
>AF125459-7|AAD12836.1| 971|Caenorhabditis elegans Hypothetical
protein Y25C1A.5 protein.
Length = 971
Score = 367 bits (902), Expect = e-101
Identities = 179/254 (70%), Positives = 199/254 (78%), Gaps = 1/254 (0%)
Frame = +2
Query: 197 MAVVEQPCYTLINFPTDLEPCNEMQLKLDLEKGDTKKKIEALKKTIGIILSGEKIP-GLL 373
M+ EQPCYTLI+ P+D E +E QLK EKG K++IEALKK I +IL+GEK +L
Sbjct: 1 MSSGEQPCYTLIHVPSDAELPSEAQLKEKFEKGGDKERIEALKKLIYMILNGEKTSQSML 60
Query: 374 MIIIRFVLPLQDHMIKKLLLIFWEIVPKTSPDGKLLQEMILVCDAYRKDLQHPNEFIRGS 553
M +IRF LP +H +KK+LLIFWE VPKT +GKLL EMILVCDAYRKDLQHPNEF+RGS
Sbjct: 61 MYVIRFCLPSNEHTLKKVLLIFWECVPKTDSNGKLLHEMILVCDAYRKDLQHPNEFVRGS 120
Query: 554 TLRFLCXXXXXXXXXXXMPAIRACLEHRHSYVRRNAVLAIFTIYRNFEFLIPDAPELVAN 733
TLRFLC MPAIRACLEHRHSYVRRNAV AIFTIY+NFEFLIPDAPELV
Sbjct: 121 TLRFLCKLREPELLEPLMPAIRACLEHRHSYVRRNAVCAIFTIYKNFEFLIPDAPELVTE 180
Query: 734 FLETEQDMSCKRNAFLMLLHADQERALTYLSSRLDNVHSFGDILQLVIVELIYKVCHTNP 913
+LE EQD SCKRNAF+MLLH DQ RAL YLS +D V SFGDILQLVIVELIYKVCH NP
Sbjct: 181 YLEQEQDASCKRNAFMMLLHVDQARALDYLSGCIDQVGSFGDILQLVIVELIYKVCHNNP 240
Query: 914 SERSRFIRTXYGLL 955
+E SRFIR Y LL
Sbjct: 241 NEASRFIRCVYNLL 254
>AC024202-5|AAP86609.1| 827|Caenorhabditis elegans C. elegans APB-1
protein, isoform c protein.
Length = 827
Score = 51.6 bits (118), Expect = 1e-06
Identities = 40/192 (20%), Positives = 86/192 (44%), Gaps = 1/192 (0%)
Frame = +2
Query: 269 QLKLDLEKGDTKKKIEALKKTIGIILSGEKIPGLLMIIIRFVLPLQDHMIKKLLLIFWEI 448
+LK +L +KK EA+KK I + G+ + L ++ + + +KKL+ ++
Sbjct: 17 ELKNELNSDKKEKKKEAVKKVIASMTVGKDVSALFPDVVN-CMQTDNVELKKLVYLYLMN 75
Query: 449 VPKTSPDGKLLQEMILVCDAYRKDLQHPNEFIRGSTLRFLCXXXXXXXXXXXMPAIRACL 628
K+ PD I+ + + KD + PN IR +R + +R C+
Sbjct: 76 YAKSQPD-----LAIMAVNTFVKDCEDPNPLIRALAVRTMGCIRVEKITEYLCDPLRRCM 130
Query: 629 EHRHSYVRRNAVLAIFTIYRNFEFLIPDAPEL-VANFLETEQDMSCKRNAFLMLLHADQE 805
+ YVR+ A + + ++ L+ + + + N L ++ + NA L +++
Sbjct: 131 KDEDPYVRKTAAVCVAKLHDMNPALVKEQGFVELLNDLLSDANPMVVANAVAALTEMNEQ 190
Query: 806 RALTYLSSRLDN 841
+ + ++S++ N
Sbjct: 191 QTVIEVNSQMVN 202
>AC024202-3|AAF36038.2| 955|Caenorhabditis elegans C. elegans APB-1
protein, isoform a protein.
Length = 955
Score = 51.6 bits (118), Expect = 1e-06
Identities = 40/192 (20%), Positives = 86/192 (44%), Gaps = 1/192 (0%)
Frame = +2
Query: 269 QLKLDLEKGDTKKKIEALKKTIGIILSGEKIPGLLMIIIRFVLPLQDHMIKKLLLIFWEI 448
+LK +L +KK EA+KK I + G+ + L ++ + + +KKL+ ++
Sbjct: 17 ELKNELNSDKKEKKKEAVKKVIASMTVGKDVSALFPDVVN-CMQTDNVELKKLVYLYLMN 75
Query: 449 VPKTSPDGKLLQEMILVCDAYRKDLQHPNEFIRGSTLRFLCXXXXXXXXXXXMPAIRACL 628
K+ PD I+ + + KD + PN IR +R + +R C+
Sbjct: 76 YAKSQPD-----LAIMAVNTFVKDCEDPNPLIRALAVRTMGCIRVEKITEYLCDPLRRCM 130
Query: 629 EHRHSYVRRNAVLAIFTIYRNFEFLIPDAPEL-VANFLETEQDMSCKRNAFLMLLHADQE 805
+ YVR+ A + + ++ L+ + + + N L ++ + NA L +++
Sbjct: 131 KDEDPYVRKTAAVCVAKLHDMNPALVKEQGFVELLNDLLSDANPMVVANAVAALTEMNEQ 190
Query: 806 RALTYLSSRLDN 841
+ + ++S++ N
Sbjct: 191 QTVIEVNSQMVN 202
>Z83122-10|CAB05601.1| 896|Caenorhabditis elegans Hypothetical
protein R11A5.1b protein.
Length = 896
Score = 50.4 bits (115), Expect = 3e-06
Identities = 36/138 (26%), Positives = 64/138 (46%)
Frame = +2
Query: 272 LKLDLEKGDTKKKIEALKKTIGIILSGEKIPGLLMIIIRFVLPLQDHMIKKLLLIFWEIV 451
LK L+ K++A+K+ I +I G+ + L +++ V ++ +KKL+ ++
Sbjct: 19 LKAMLDSNKDNLKVDAMKRIINLIAKGKDVSELFAAVVKNVAA-KNVELKKLVFVYLVRY 77
Query: 452 PKTSPDGKLLQEMILVCDAYRKDLQHPNEFIRGSTLRFLCXXXXXXXXXXXMPAIRACLE 631
+ D LL +++ L+ PN+ IRGS LR L + AI+ +
Sbjct: 78 AEEQQDLALLS-----ISTFQRALKDPNQLIRGSALRVLTSIRVPMVAPIMLLAIKDAVR 132
Query: 632 HRHSYVRRNAVLAIFTIY 685
YVR+ A AI +Y
Sbjct: 133 DMSPYVRKVAAHAIPKLY 150
>Z83122-9|CAB05598.1| 906|Caenorhabditis elegans Hypothetical
protein R11A5.1a protein.
Length = 906
Score = 50.4 bits (115), Expect = 3e-06
Identities = 36/138 (26%), Positives = 64/138 (46%)
Frame = +2
Query: 272 LKLDLEKGDTKKKIEALKKTIGIILSGEKIPGLLMIIIRFVLPLQDHMIKKLLLIFWEIV 451
LK L+ K++A+K+ I +I G+ + L +++ V ++ +KKL+ ++
Sbjct: 19 LKAMLDSNKDNLKVDAMKRIINLIAKGKDVSELFAAVVKNVAA-KNVELKKLVFVYLVRY 77
Query: 452 PKTSPDGKLLQEMILVCDAYRKDLQHPNEFIRGSTLRFLCXXXXXXXXXXXMPAIRACLE 631
+ D LL +++ L+ PN+ IRGS LR L + AI+ +
Sbjct: 78 AEEQQDLALLS-----ISTFQRALKDPNQLIRGSALRVLTSIRVPMVAPIMLLAIKDAVR 132
Query: 632 HRHSYVRRNAVLAIFTIY 685
YVR+ A AI +Y
Sbjct: 133 DMSPYVRKVAAHAIPKLY 150
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 31.1 bits (67), Expect = 1.8
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -1
Query: 798 SACSSMRKALRLQDMSCSVSRKFATSSGASGIRNSKFLYMVK 673
+ CSS+ AL + S RKFA + + I++SK+LY +K
Sbjct: 981 TTCSSVATALEMAVKSIREGRKFAIVATSQLIQSSKWLYSLK 1022
>AC024790-1|AAK84609.1| 315|Caenorhabditis elegans Hypothetical
protein Y47D7A.3 protein.
Length = 315
Score = 29.9 bits (64), Expect = 4.2
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = -1
Query: 840 LSSLEDKYVKAR-SWSACSSMRKALRLQDMSCSVSRKFATSSGASGIRNSK 691
LS+ D+Y++ + S+CS ++ ALRL ++S T +GI+NSK
Sbjct: 220 LSNARDRYIQCMINVSSCSEVQSALRLAEISLIFPS--ITVGKLNGIKNSK 268
>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
protein.
Length = 1173
Score = 28.7 bits (61), Expect = 9.6
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Frame = +2
Query: 245 DLEPCNEMQLKLDLEKGDTKKKIEALKKTIGI---ILSGEK--IPGLLMIIIRFVLPLQ- 406
D + +++ KLDLEK K I L++ + + GEK L+ R ++ L+
Sbjct: 814 DKQTIADLRKKLDLEKAHKKAVINKLEEEMAKRQPLKKGEKGVTKSALIKKEREIMALEQ 873
Query: 407 --DHMIKKLLLIFWEIVPKTSPDGKLLQEMILVCDAYRKDLQHPNE 538
D M K++ +F+E + +Q+M DA R +L+ E
Sbjct: 874 ERDTMSKRIAALFYENDKQAEHFNIAIQDMQTTQDALRDELKECKE 919
>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
Length = 1173
Score = 28.7 bits (61), Expect = 9.6
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Frame = +2
Query: 245 DLEPCNEMQLKLDLEKGDTKKKIEALKKTIGI---ILSGEK--IPGLLMIIIRFVLPLQ- 406
D + +++ KLDLEK K I L++ + + GEK L+ R ++ L+
Sbjct: 814 DKQTIADLRKKLDLEKAHKKAVINKLEEEMAKRQPLKKGEKGVTKSALIKKEREIMALEQ 873
Query: 407 --DHMIKKLLLIFWEIVPKTSPDGKLLQEMILVCDAYRKDLQHPNE 538
D M K++ +F+E + +Q+M DA R +L+ E
Sbjct: 874 ERDTMSKRIAALFYENDKQAEHFNIAIQDMQTTQDALRDELKECKE 919
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,927,379
Number of Sequences: 27780
Number of extensions: 466717
Number of successful extensions: 1172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3673557334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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