Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_N05
         (1314 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          28   0.16 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    25   1.9  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 28.3 bits (60), Expect = 0.16
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 738 RKFATSSGASGIRNSKFLYMVKIARTAFLLTY 643
           +K    +GASG R +K   MV +  TAFLL +
Sbjct: 93  KKVRKRAGASGRREAKITKMVALMITAFLLAW 124


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 860 ILQLVIVELIYKVCHTNPSER 922
           ILQ +I+ L  ++CH NP  +
Sbjct: 2   ILQTIILILSARICHGNPDAK 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 283,996
Number of Sequences: 438
Number of extensions: 5904
Number of successful extensions: 28
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 45263751
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)