Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_N03
         (1350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    31   1.9  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    31   1.9  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   9.9  
AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical ...    29   9.9  

>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 16/60 (26%), Positives = 19/60 (31%)
 Frame = -1

Query: 558 WGXPXXPPXXXXNXXPPPDXRGXXVXXRGXGXAPQXPTXXPRGLADXXXQXKPXTPPPXP 379
           +G P   P       PPP  +   +        P  P   P GL        P  PPP P
Sbjct: 598 YGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPP 657


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 16/60 (26%), Positives = 19/60 (31%)
 Frame = -1

Query: 558 WGXPXXPPXXXXNXXPPPDXRGXXVXXRGXGXAPQXPTXXPRGLADXXXQXKPXTPPPXP 379
           +G P   P       PPP  +   +        P  P   P GL        P  PPP P
Sbjct: 424 YGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPP 483


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 18/59 (30%), Positives = 19/59 (32%)
 Frame = -1

Query: 567 PXXWGXPXXPPXXXXNXXPPPDXRGXXVXXRGXGXAPQXPTXXPRGLADXXXQXKPXTP 391
           P   G P  PP       PPP   G          AP  P   P GL       +P TP
Sbjct: 78  PGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAP-PPPPPPSGLGVAPQPPRPKTP 135


>AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical
           protein T22D1.2 protein.
          Length = 302

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 17/54 (31%), Positives = 19/54 (35%)
 Frame = -1

Query: 540 PPXXXXNXXPPPDXRGXXVXXRGXGXAPQXPTXXPRGLADXXXQXKPXTPPPXP 379
           PP       PPP   G      G G A + P   P+G           TPPP P
Sbjct: 34  PPPPKGTGTPPPPPTGEPQDLSGEGNASRRPPPPPKGTG---------TPPPPP 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,128,248
Number of Sequences: 27780
Number of extensions: 153087
Number of successful extensions: 181
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3798437470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)