Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_M23
         (1237 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch...    29   1.0  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    29   1.8  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    27   4.1  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   5.4  
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    26   9.4  

>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 401

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 5/180 (2%)
 Frame = +2

Query: 437 VGRYRMLKDMVSHKILKTKSEISALTDFLDWLEKEKGDGSVILIYHEPRRFSPTMLLEAL 616
           +G+   +K  +  ++ K   E++     +  LEK  GD    L        + T  +E+L
Sbjct: 83  LGKVSGIKSTLGERLKKDSQELAQNRKRIQELEKSLGDAEEALKLSNEETVTLTAQVESL 142

Query: 617 TRYDLLDRFNSIVAGFTDSYALAADKCKATVKXXXXXXXXXXXXXXXSLSVDSAIERATA 796
           T+ D+ D      A   +   L + + K   +                   +  + R T 
Sbjct: 143 TQ-DITD-LRQQNASLVEENQLLSTQSKQWERRARDEHEMQESLAVRLADCEEQLARETE 200

Query: 797 -----AYKIVEHLAQGEQQEVSASGESLSASKDMVETARVWARPVHTELEALANLKKILE 961
                  +I  HL    Q E+       S ++++ E  R W + +    E  A+  K  E
Sbjct: 201 RQEQYEVEIQRHLTNQHQLEIELESTKASHTENLGELTRNWQKAMDDVTEKFASKSKEYE 260


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
            2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +2

Query: 821  AQGEQQEVSASGESLSASKDMVETARVWARPVHTELEALANLKKIL 958
            AQG+ QEV +  E ++  +D++   R   +P  T+ + +   +K++
Sbjct: 913  AQGDTQEVKSKKEGMAIVRDIMRQWRSNVKPEMTQQQMMDQFQKVI 958


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -2

Query: 585  LLGSWYIRMTLPSPFSFSNQSRKSVKADISDFVLRIL*ETI 463
            LL S+YI+  L   + FS Q  +   A+  DFV +I  ET+
Sbjct: 923  LLESFYIQFPLLELYKFSCQQLQDYIAEGKDFVTKIEEETL 963


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +2

Query: 317  IDEICQIAAYTPKQTYSQYIMPYGDLNPGARRRHNVRVVTVG 442
            +D   Q+  +  + ++ + I    DL P     HNV+++T+G
Sbjct: 1460 VDPSAQLLVFVGRWSHQKGIDLIADLAPKLLTEHNVQLITIG 1501


>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 806 SYRQLLPVRWRCPLTESPRLVAHEPTLAAKLTSLLPCIYLQPG 678
           +Y +   + W   L +S  L+A +   A+K     PC YL PG
Sbjct: 73  AYMKAAVLGWMVELLQSFFLIADDIMDASKTRRGQPCWYLMPG 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,215,370
Number of Sequences: 5004
Number of extensions: 81219
Number of successful extensions: 224
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 671365334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)