Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_M21
         (1227 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    27   7.0  
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch...    26   9.3  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    26   9.3  

>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 133 VNYDLVSKSRCTINGVPSILKIYLQDNPVL 222
           V  +L+SKS  TI G P+ L   + D+P L
Sbjct: 187 VPIELISKSLKTIEGFPASLNDLVYDSPTL 216


>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 124 IHTVNYDLVSKSRCTINGVPSILKIYLQDNPVLCDDHLYELV 249
           +H V  DL+ K    +  V +  ++YL+ +  + DDH+ + V
Sbjct: 277 MHAVTVDLMRKYNKEVAIVHNTYQLYLKKSRKIMDDHIKKCV 318


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 316 APILMRALND-IGPKKENSPLIVVAHMVPDIRLAPQDNLNHETVSSAIPQFVYRRVN 483
           +P+ M +L + +   +  SP+   A  +P    + Q  +NH +  +++PQ  +   N
Sbjct: 217 SPLSMHSLQESLHSVEPESPIFQQAPQIPLSNASQQSYINHSSDGASLPQSSFLNFN 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,482,117
Number of Sequences: 5004
Number of extensions: 96098
Number of successful extensions: 220
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 665388788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)