Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_M21
         (1227 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0602 + 19183549-19184919                                         28   0.48 
11_06_0184 - 21006659-21009823                                         29   9.9  
11_04_0401 - 17251759-17252208,17252545-17253022,17254235-172542...    29   9.9  
04_04_0779 - 28023735-28024058,28024520-28024618,28024704-280249...    29   9.9  
03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,449...    29   9.9  

>08_02_0602 + 19183549-19184919
          Length = 456

 Score = 27.9 bits (59), Expect(2) = 0.48
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = +1

Query: 241 ELVTVFESL----NARVSGASTCVAPQTTAPILMRALNDIGPKKENSPLIVVA-HMVPDI 405
           EL TV   L     A  +GAS  VA    A +L  A  D+     N PL++ A H V D 
Sbjct: 179 ELNTVLHHLAMCRQAAAAGASGSVAAALPAGVLDDACADLDVTSSNQPLLLSAEHEVVDA 238

Query: 406 RLAPQD 423
             A Q+
Sbjct: 239 LYANQE 244



 Score = 23.8 bits (49), Expect(2) = 0.48
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 175 GVPSILKIYLQDNPVLCDDHLYELV 249
           GV +ILK      P LCDD +  L+
Sbjct: 124 GVSNILKTLRHLKPELCDDAMRTLI 148


>11_06_0184 - 21006659-21009823
          Length = 1054

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
 Frame = -3

Query: 973 VMSLPG-KXFXNGDVHTICFIH--KHYNAENR-FTENRTDYTEFLIYNVFKLIGLI**LF 806
           V+ L G K    GD+HT+C IH  K+ +  N    +   +  +  +     + G    +F
Sbjct: 710 VLDLEGRKGLKAGDLHTVCKIHKLKYLSLRNTDIAQLPKEIGQLKLLETLDIRGTRVQVF 769

Query: 805 HLRLP*LK---TSCPFFYVEQYIFVPKAKYS 722
           H  LP LK     C   Y ++ I   K  +S
Sbjct: 770 HTALPMLKHLLAGCIIDYPKEDIIKSKESFS 800


>11_04_0401 -
           17251759-17252208,17252545-17253022,17254235-17254290,
           17254489-17255019
          Length = 504

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 818 LIVISSSPALIKDILPIFLCRAVY 747
           LI++S  P  +KD  PI LC  VY
Sbjct: 451 LILMSDQPVDLKDFRPISLCNVVY 474


>04_04_0779 -
           28023735-28024058,28024520-28024618,28024704-28024940,
           28025227-28025334,28025427-28025486,28025813-28025888,
           28025984-28026144,28026374-28026436,28026543-28026630,
           28026872-28027612,28027695-28028239
          Length = 833

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 274 EHSDSQILSPVRKDGRRTTQDYLEDKSS 191
           +H DSQ+ SPV  D    T   L++KSS
Sbjct: 155 DHGDSQLQSPVGNDAENATLVTLKNKSS 182


>03_01_0611 +
           4493618-4493641,4494705-4494730,4495758-4497471,
           4498179-4499263,4499351-4500296
          Length = 1264

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
 Frame = -2

Query: 404 ISGTMCATTIS-GEFSFFGPISLRARI-KIGAVV--CGATQVDAPLTRAFRLSNTVTSS* 237
           +S T  A T S G FS    +S  +R   +G++V   G   +   +TRA++  +TV    
Sbjct: 547 LSYTASAVTESDGPFSE-DELSANSRTGSLGSIVEVKGLQHMKPTITRAYKADDTVLR-- 603

Query: 236 RWSSHNTGLS*R*IFKILGTPLMVHRDFETRS*FTVWILLNDRSAEQS 93
           RW SH T    R    +L    M+    +  S F+ WI +++ S E +
Sbjct: 604 RWRSHGT----RTGISVLTDQKMLFPIVQVGSQFSKWITVHNPSLEHA 647


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,263,361
Number of Sequences: 37544
Number of extensions: 592143
Number of successful extensions: 1228
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3771247248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)