Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_M21
         (1227 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    33   0.41 
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    33   0.41 
Z79598-1|CAB01867.3|  586|Caenorhabditis elegans Hypothetical pr...    32   0.95 

>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 33.1 bits (72), Expect = 0.41
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +1

Query: 142 DLVSKSRCTINGVPSILKIYLQDNPVLCDDHLYELVTVFESLNARVSGASTCVAPQ 309
           D+ S S  T   + S+  ++L  NP++CD +L  L  +    N   SGA  C  P+
Sbjct: 394 DIKSISEVTFQNLTSLSTLHLAKNPLICDCNLQWLAQINLQKNIETSGA-RCEQPK 448


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 33.1 bits (72), Expect = 0.41
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +1

Query: 142 DLVSKSRCTINGVPSILKIYLQDNPVLCDDHLYELVTVFESLNARVSGASTCVAPQ 309
           D+ S S  T   + S+  ++L  NP++CD +L  L  +    N   SGA  C  P+
Sbjct: 394 DIKSISEVTFQNLTSLSTLHLAKNPLICDCNLQWLAQINLQKNIETSGA-RCEQPK 448


>Z79598-1|CAB01867.3|  586|Caenorhabditis elegans Hypothetical
           protein C44H4.1 protein.
          Length = 586

 Score = 31.9 bits (69), Expect = 0.95
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +1

Query: 85  LPSLCSADLSFNKIHTVNYDLVSKSRCTINGVPSILKIYLQDNPVLCDDHL 237
           LP L S DLS N++ ++  +++  S       P   K+ +Q+NP  CD  L
Sbjct: 368 LPMLTSLDLSSNRLESLPSNVIYDSLMQKKTSPVQRKLSIQNNPWRCDKDL 418


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,793,198
Number of Sequences: 27780
Number of extensions: 536629
Number of successful extensions: 1231
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3391198850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)