Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_M21
         (1227 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   5.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   9.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   9.5  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 511 QEDGISVIADPPLTLPSTNRKVVVKWPE 594
           +E GI V  DP LT PS+N    V  P+
Sbjct: 423 REYGIRVERDPILTPPSSNPVSPVPSPD 450


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 157 SRCTINGVPSILKIYLQDNPVLCDDHLYELVTVFESLNAR 276
           S C I GV  +L  +L+    L   + +    ++ESL  R
Sbjct: 14  SSCVIFGVLFVLFSFLRTRTKLQPTYFHHTYIIYESLCGR 53


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 157 SRCTINGVPSILKIYLQDNPVLCDDHLYELVTVFESLNAR 276
           S C I GV  +L  +L+    L   + +    ++ESL  R
Sbjct: 14  SSCVIFGVLFVLFSFLRTRTKLQPTYFHHTYIIYESLCGR 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 296,965
Number of Sequences: 438
Number of extensions: 6202
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 41781924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)