Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_M20
(1310 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc... 155 1e-38
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 40 6e-04
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar... 35 0.029
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 35 0.029
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 34 0.038
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 32 0.20
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 31 0.47
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 31 0.47
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 30 0.62
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c... 29 1.4
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom... 29 1.9
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 28 2.5
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 28 2.5
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 28 2.5
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo... 28 3.3
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 27 4.3
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 27 4.3
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 27 5.7
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 27 5.7
>SPBC17D11.08 |||WD repeat protein, human WDR68
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 155 bits (377), Expect = 1e-38
Identities = 96/222 (43%), Positives = 131/222 (59%), Gaps = 12/222 (5%)
Frame = +2
Query: 275 KEIYKYQAPWPLYSMNWSVRPDKRFR-LALGSFVEEYNNKVQIISL---DEDTSEFT-AK 439
KE Y APW ++++W + +A+GS EE NN +Q++ L D+ S A+
Sbjct: 42 KEYTGYNAPWIPFALDWLKQGKYSSEWIAMGSLNEEPNNMIQLLKLITGDDGNSHLEKAQ 101
Query: 440 STFDHPYPTTKIMWIPDSKGVYPD--LLATSGDYLRIWR----AG-EPYTLFECVLNNNK 598
+ D YP TK++W P S G D LLA++ LR+W+ AG + L + L+ +
Sbjct: 102 AATDLEYPVTKLLWNPSSVGSNTDSQLLASTDQQLRLWKTDFEAGIDSPLLCQASLSTHV 161
Query: 599 NSDFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVKTQLIAHDK 778
+ APLTSFDW + DP+ I SS+DTTCT+W + V+ KTQLIAHDK
Sbjct: 162 KTHNNAPLTSFDWCKTDPSYIVVSSLDTTCTVWDI-----------VAQQSKTQLIAHDK 210
Query: 779 EVYDIAFSRAGGGRDMFASVGADGSVRMXDLRHLEHSTIIYE 904
EVYD+AF + ++F SVGADGSVRM DLR L+HSTIIYE
Sbjct: 211 EVYDVAFLK--DSINVFVSVGADGSVRMFDLRSLDHSTIIYE 250
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 40.3 bits (90), Expect = 6e-04
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
Frame = +2
Query: 617 PLTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVKTQLIAHDKEVYDIA 796
P TS WN + + + S D T + W L ++ + +K + +H+K+V D+
Sbjct: 186 PCTSVCWNFLSKGTLVSGSQDATLSCWDLNA----YNESDSASVLKVHISSHEKQVSDVR 241
Query: 797 FSRAGGGRDMFASVGADGSVRMXDLRHLEHSTIIYEDPQ-HT-PXLRLAWNKQDPNYLAT 970
F +D+ ASV D + + D+R + ST H+ P +A+N + LAT
Sbjct: 242 FHYK--HQDLLASVSYDQYLHVHDIRRPDASTKPARSVHAHSGPIHSVAFNPHNDFILAT 299
Query: 971 IAMER 985
+ ++
Sbjct: 300 CSTDK 304
>SPAC8F11.07c |cdc24||DNA replication protein
Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 501
Score = 34.7 bits (76), Expect = 0.029
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -3
Query: 420 VSSSREIICTLLLYSSTKLP-RANLNLLSGLTDQFIEYNGHGAWYLYISLRFVP 262
+ S E C ++L+SS L N+L G T +F + H WYL +RF+P
Sbjct: 106 LKDSEENTCEMILHSSFYLLFHEPFNILKGSTLRFSQSRIHQKWYLRKQIRFLP 159
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 34.7 bits (76), Expect = 0.029
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 6/152 (3%)
Frame = +2
Query: 440 STFDHPYPTTKIMWIPDSKGVYPDLLATSGDYL-RIW---RAGEPYTLFECVLNNNKNSD 607
+T H T W PDS ++ L T D RIW R +F V +
Sbjct: 192 NTKGHIAEITDGCWQPDSSQIF---LTTGYDSTARIWDVNRTKSQLEVFVHVPEGSHTGL 248
Query: 608 FCAPLTSFDWNEVDPNLIGTSSIDTTCTIW--GLETGQVLGRVNEVSGHVKTQLIAHDKE 781
P+TS WN P+ T+ +D + W G T + + ++ + H+ Q I+
Sbjct: 249 SRIPVTSCAWNPAKPDNFATAVLDGSIQFWQKGSRTKRPVMKIKD--AHLPQQGIS---- 302
Query: 782 VYDIAFSRAGGGRDMFASVGADGSVRMXDLRH 877
++FS+ G + S G D ++R+ DLR+
Sbjct: 303 --CLSFSQDG---NYLLSRGEDNALRVWDLRN 329
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 34.3 bits (75), Expect = 0.038
Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +2
Query: 764 IAHDKEVYDIAFSRAGGGRDMFASVGADGSVRMXDLRHLEHSTIIYEDPQHTPXLR-LAW 940
++H V D+ +S + +++F+S DG+ R+ D+R+ + ++ + + + L+W
Sbjct: 288 LSHTAAVEDLQWSPSE--KNVFSSCSCDGTFRIWDVRNKQKTSALTVNAHPGVDVNVLSW 345
Query: 941 NKQDPNYLAT 970
N + PN LAT
Sbjct: 346 NTRVPNLLAT 355
Score = 31.1 bits (67), Expect = 0.35
Identities = 34/148 (22%), Positives = 54/148 (36%), Gaps = 1/148 (0%)
Frame = +2
Query: 431 TAKSTF-DHPYPTTKIMWIPDSKGVYPDLLATSGDYLRIWRAGEPYTLFECVLNNNKNSD 607
T S F H + W P K V+ + G + RIW +N + D
Sbjct: 282 TDSSPFLSHTAAVEDLQWSPSEKNVFSSC-SCDGTF-RIWDVRNKQKTSALTVNAHPGVD 339
Query: 608 FCAPLTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVKTQLIAHDKEVY 787
+ WN PNL+ T + + ++W L + L + V+ V H +Y
Sbjct: 340 ----VNVLSWNTRVPNLLATGADNGVWSVWDLRS---LKSSSSVATPV-ASFKWHRAPIY 391
Query: 788 DIAFSRAGGGRDMFASVGADGSVRMXDL 871
I + + VGAD + + DL
Sbjct: 392 SIEWH--PNEDSVIGVVGADNQISLWDL 417
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 31.9 bits (69), Expect = 0.20
Identities = 22/86 (25%), Positives = 40/86 (46%)
Frame = +2
Query: 617 PLTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVKTQLIAHDKEVYDIA 796
P+ S +W+ D + + S+D + ++ ++TGQ Q+ AHD V +
Sbjct: 76 PVLSVNWSR-DGTKVASGSVDKSAKVFDIQTGQ------------NQQVAAHDDAVRCVR 122
Query: 797 FSRAGGGRDMFASVGADGSVRMXDLR 874
F A G + A+ D +++ DLR
Sbjct: 123 FVEAMGTSPILATGSWDKTLKYWDLR 148
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 30.7 bits (66), Expect = 0.47
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 761 LIAHDKEVYDIAFSRAGGGRDMFASVGADGSVRMXDLRHLEHSTIIYEDPQHTPXL-RLA 937
L H K VYD+ +S + FAS GADG V + D + + +YE H + ++
Sbjct: 185 LRVHSKFVYDVRYSP---NDERFASAGADGKVYVFDGKTGDQ---VYEIDAHKGSIFSIS 238
Query: 938 WNKQDPNYLATIA 976
W+ ++ + A
Sbjct: 239 WSPDSSQFVTSSA 251
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 30.7 bits (66), Expect = 0.47
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +2
Query: 620 LTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQVLGRVNEVS 742
LTSFD+++ L+ T+S+D T W L TG ++ ++ S
Sbjct: 575 LTSFDFSDTGRWLV-TASLDGTIRTWDLPTGHLIDSISTPS 614
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 30.3 bits (65), Expect = 0.62
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 626 SFDWNEVDPNLIGTSSIDTTCTIWGLETGQVLG 724
S W DP + +S D +W +ETG+ LG
Sbjct: 265 SLSWCPEDPTFLLSSGKDGRAMVWNVETGESLG 297
>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 29.1 bits (62), Expect = 1.4
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +2
Query: 590 NNKNSDFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVKTQLIA 769
+NK S F PL +D+ +PN ++ + L GQ V ++ + K +
Sbjct: 19 SNKASKFPLPLAMWDFGHCNPNACSGKRLERLGCVRNLRIGQKFRGV-VITPNGKVPVSP 77
Query: 770 HDKEVYD 790
DKE +D
Sbjct: 78 ADKEYFD 84
>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 536 LRIWRAGEPYTLFECVLNNNKNSDFCAPLTSFDWNEVDPNLIGTSSIDTTCTIW 697
+++W P ++ LNN NS T + PNL+G +S D C W
Sbjct: 128 IKLWLGNLPNSVQ--TLNNGSNSRILTVATHYS----SPNLLGYTSSDGLCKFW 175
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 28.3 bits (60), Expect = 2.5
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Frame = +2
Query: 665 TSSIDTTCTIWGLETGQ---VLGRVNEVSGHV---KTQLIAHDKEVYDIAFSRAGGGRDM 826
TSS D T +W + L N++ V + H V+D+ + +
Sbjct: 421 TSSFDWTVRLWQCSPSRNQHELVPSNDLDEQVIINSCKTFTHKAMVFDVKWCVSEPC--C 478
Query: 827 FASVGADGSVRMXDLRHLEHSTIIYEDPQHTPXLRLAWNKQDPN 958
FASV A G++ + DL+ + + + P P ++AW + N
Sbjct: 479 FASVDALGNLNLWDLQKDVEAPVTSDIPDGKPLNKIAWQPEKRN 522
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 28.3 bits (60), Expect = 2.5
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 620 LTSFDWNEVDPNLIGTSSIDTTCTIWGLET 709
+T +W+ +P+++ T SID++ W L +
Sbjct: 325 VTDMNWHRQNPDVLATCSIDSSVHCWDLRS 354
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 28.3 bits (60), Expect = 2.5
Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 2/149 (1%)
Frame = +2
Query: 467 TKIMWIPDSKGVYPDLLATSGDYLRIW--RAGEPYTLFECVLNNNKNSDFCAPLTSFDWN 640
+ ++ I SKG DL ATSG+ + IW P T FE +D P+ F++
Sbjct: 148 SSLLDIDTSKG--GDLFATSGENVSIWDYSRDTPVTKFEW------GAD-TLPVVKFNYT 198
Query: 641 EVDPNLIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVKTQLIAHDKEVYDIAFSRAGGGR 820
E +++ ++ +D + I+ L T L ++ ++T I+ + AF+
Sbjct: 199 ET--SVLASAGMDRSIVIYDLRTSSPL---TKLITKLRTNSISWNPME---AFN------ 244
Query: 821 DMFASVGADGSVRMXDLRHLEHSTIIYED 907
F + D ++ M D+R+L+ + +Y+D
Sbjct: 245 --FVAGSEDHNLYMYDMRNLKRALHVYKD 271
>SPAC26H5.07c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 505
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/41 (29%), Positives = 16/41 (39%)
Frame = -2
Query: 511 VWIHPLAIRYPHDLGGWVWVIKGTFCSELTCVFIKGNYLYF 389
+W + RY HDL I G + C + Y YF
Sbjct: 196 IWWSFIMFRYRHDLLQVQKYISGVVALSIVCTMVSTGYFYF 236
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 27.5 bits (58), Expect = 4.3
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -2
Query: 859 PDGSVGAHGSEHISPPAGPTERYVVHFLIMSDQLSLHVPR--HFIDPAQDLSS 707
P +VGA G++ I P HF ++ Q +L VPR I+ A+ +S+
Sbjct: 1043 PGTAVGAIGAQSIGEPGTQMTLKTFHFAGVAAQTTLGVPRIKEIINAAKTIST 1095
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 27.5 bits (58), Expect = 4.3
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +2
Query: 419 TSEFTAKSTFDHPYPTTKIMWIPDSKGVYPDL--LATSGD-YLRIWRAG 556
TSEF S+ HP + I D KG Y ++ L + GD Y I AG
Sbjct: 403 TSEFCISSSLRHPNVIHTLDLIQDGKGDYCEVMELCSGGDLYTLIMAAG 451
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 695 WGLETGQVLGRVNEVSGHVKTQLIAHDKEVYDIAFS 802
W L+TGQ+L + + K IA+ E+Y + ++
Sbjct: 49 WDLKTGQLLSKWKDSDCSAKVTCIANFDEMYAVGYA 84
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 27.1 bits (57), Expect = 5.7
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +2
Query: 509 DLLATSGD--YLRIWRAGEPYTLFECVLNNNKNSDFCAPLTSFDWNEVDPNLIGTSSIDT 682
D+L T+G R+W + VL+ +K++ + S E DP ++ T S+D+
Sbjct: 260 DVLVTAGRDAVARVWDMRTRQNVH--VLSGHKST-----VASLAVQEFDPQVV-TGSMDS 311
Query: 683 TCTIWGLETGQVL 721
T +W L G+ L
Sbjct: 312 TIRLWDLAAGKTL 324
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,556,845
Number of Sequences: 5004
Number of extensions: 95870
Number of successful extensions: 325
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 717371258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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