Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_M19
         (1367 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    36   0.010
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.11 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   3.5  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   8.0  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 36.3 bits (80), Expect = 0.010
 Identities = 36/141 (25%), Positives = 38/141 (26%), Gaps = 7/141 (4%)
 Frame = +1

Query: 820  PLXPPXGGXPPXGLXXXXPXGGLGXPXPPLXXPGGGGPXPPXXPXGGXPPPXXXXXPPPP 999
            PL  P    P   L    P   L    PP+  P    P P   P    P P     PP P
Sbjct: 995  PLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAP-PIPVPSTAPPVPIPTSTPPVP 1053

Query: 1000 XGXGGXXXXXXXXXXXXXXXXXF-XXGGGPP---PXGPPXXPR--XXGXPXPLXXXXXXP 1161
                G                      G PP   P G P  P+      P P       P
Sbjct: 1054 KSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPP 1113

Query: 1162 GGXXGGAPPXXXGG-GPPPGP 1221
                 GAPP        PP P
Sbjct: 1114 VPAPSGAPPVPKPSVAAPPVP 1134



 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +1

Query: 901  PPLXXPGGGGPXPPXXPXGGXPPPXXXXXPPPP 999
            PP+  P  G P  P    G  P P     PP P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVP 1201



 Score = 26.6 bits (56), Expect = 8.0
 Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
 Frame = +1

Query: 820  PLXPPXGGXPPXGLXXXXPXGGLGXPXPPLXXPGGGGPXPPXXPXGGXPP-PXXXXXPPP 996
            P+  P  G PP       P  G+    PP+  P    P P   P  G PP P     PP 
Sbjct: 1170 PVPAPSSGIPPV----PKPAAGV----PPVPPPSEAPPVPK--PSVGVPPVPPPSTAPPV 1219

Query: 997  PXGXGG 1014
            P    G
Sbjct: 1220 PTPSAG 1225


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = +1

Query: 895  PXPPLXXPGGGGPXPPXXP--XGGXPPPXXXXXPPPPXGXGG 1014
            P PP     GG P PP  P   G  PPP     PPP    GG
Sbjct: 750  PVPPPAPIMGGPPPPPPPPGVAGAGPPP--PPPPPPAVSAGG 789



 Score = 29.5 bits (63), Expect = 1.1
 Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
 Frame = +1

Query: 1084 PPPXGPPXXPRXXGXPXPLXXXXXXPGGXXGGAPPXXXGG-GPPPGP 1221
            PPP      P     P P+       GG     PP    G GPPP P
Sbjct: 733  PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 29.5 bits (63), Expect = 1.1
 Identities = 18/43 (41%), Positives = 19/43 (44%)
 Frame = +3

Query: 963  PPPXXXLXPPPAXGXGGXPPXPXXRPRGGXXXXXFLXGGGPPP 1091
            P P     PPPA   GG PP P   P G       + G GPPP
Sbjct: 744  PAPAPIPVPPPAPIMGGPPPPPP--PPG-------VAGAGPPP 777



 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
 Frame = +1

Query: 850 PXGLXXXXPXGGLGXPXPPLXXPG--GGGPXPPXXP 951
           P  +    P   +G P PP   PG  G GP PP  P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +3

Query: 954  GGXPPPXXXLXPPPAXGXGGXPPXPXXRP 1040
            GG PPP     PPP     G PP P   P
Sbjct: 759  GGPPPPP----PPPGVAGAGPPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 4.6
 Identities = 17/55 (30%), Positives = 18/55 (32%)
 Frame = -2

Query: 889 PXPRXGXXXGGPXGGXPPXGXXGGXXTPXGGGPPXTGXREXXGGRXPGGAPXXKP 725
           P P      GGP    PP G  G    P    PP        G R    AP  +P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAV---SAGGSRYYAPAPQAEP 801



 Score = 26.2 bits (55), Expect(2) = 0.11
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 1078 GGPPPXGPPXXPRXXGXPXP 1137
            GGPPP  PP      G P P
Sbjct: 759  GGPPPPPPPPGVAGAGPPPP 778



 Score = 25.0 bits (52), Expect(2) = 0.11
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +1

Query: 901 PPLXXPGGGGPXPPXXPXGGXPPPXXXXXPPPP 999
           PP   P    P P   P    PP      PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +1

Query: 925  GGPXPPXXPXGGXPPPXXXXXPPPPXG 1005
            G P PP  P G  PP      PPPP G
Sbjct: 7    GNPPPPPPPPGFEPP--SQPPPPPPPG 31


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 18/70 (25%), Positives = 18/70 (25%)
 Frame = +1

Query: 796  PXRXGXXFPLXPPXGGXPPXGLXXXXPXGGLGXPXPPLXXPGGGGPXPPXXPXGGXPPPX 975
            P   G   P  PP G               L    PP   P      P   P     PP 
Sbjct: 393  PAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPS 452

Query: 976  XXXXPPPPXG 1005
                PP P G
Sbjct: 453  APIAPPLPAG 462



 Score = 27.5 bits (58), Expect = 4.6
 Identities = 19/61 (31%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
 Frame = +1

Query: 820 PLXPPXGGXP-PXGLXXXXPXGGLGXPXPPLXXPGGGGPXPPXXPXGGXPPPXXXXXPPP 996
           P  PP      P G     P        PPL  P G    PP  P    PPP     P  
Sbjct: 429 PSLPPSAPPSLPMGAPAAPPLPPSAPIAPPL--PAGMPAAPPLPPAAPAPPPAPAPAPAA 486

Query: 997 P 999
           P
Sbjct: 487 P 487


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 16/44 (36%), Positives = 16/44 (36%)
 Frame = -2

Query: 874 GXXXGGPXGGXPPXGXXGGXXTPXGGGPPXTGXREXXGGRXPGG 743
           G   GGP G     G  GG     GGG    G      G  PGG
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.160    0.583 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,944
Number of Sequences: 5004
Number of extensions: 40508
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 755127640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)