Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_M19
         (1367 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    33   0.025
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            30   0.18 
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    27   0.95 
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    25   6.7  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
            binding protein protein.
          Length = 838

 Score = 32.7 bits (71), Expect = 0.025
 Identities = 39/143 (27%), Positives = 41/143 (28%), Gaps = 14/143 (9%)
 Frame = +1

Query: 832  PXGGXPPXGLXXXXPXGGLGXPX------PPLXXPGGGGPXPPXX--------PXGGXPP 969
            P  G PP G     P G +G P       P    PGG  P PP          P G  P 
Sbjct: 181  PNPGMPP-GPQMMRPPGNVGPPRTGTPTQPQPPRPGGMYPQPPGVPMPMRPQMPPGAVPG 239

Query: 970  PXXXXXPPPPXGXGGXXXXXXXXXXXXXXXXXFXXGGGPPPXGPPXXPRXXGXPXPLXXX 1149
                  P PP   G                     GG  P   P       G P  +   
Sbjct: 240  MQPGMQPRPPSAQGMQRPPMMGQPPPIRPPNPM--GGPRPQISPQNSNLSGGMPSGMVGP 297

Query: 1150 XXXPGGXXGGAPPXXXGGGPPPG 1218
               P    GGAP     GGPP G
Sbjct: 298  PRPPMPMQGGAP-----GGPPQG 315



 Score = 31.1 bits (67), Expect = 0.077
 Identities = 26/88 (29%), Positives = 30/88 (34%), Gaps = 10/88 (11%)
 Frame = +1

Query: 772  PGXRSXGGPXRXGXXFPLXPPX--GGXPPX------GLXXXXPXGGLGXPXPPLXXPGG- 924
            P  +    P   G   P+ PP   GG  P        L    P G +G P PP+   GG 
Sbjct: 249  PSAQGMQRPPMMGQPPPIRPPNPMGGPRPQISPQNSNLSGGMPSGMVGPPRPPMPMQGGA 308

Query: 925  -GGPXPPXXPXGGXPPPXXXXXPPPPXG 1005
             GGP     P     P        PP G
Sbjct: 309  PGGPPQGMRPNFYNRPMGDPQTSRPPSG 336



 Score = 29.5 bits (63), Expect = 0.24
 Identities = 35/140 (25%), Positives = 38/140 (27%), Gaps = 16/140 (11%)
 Frame = +1

Query: 850  PXGLXXXXPXGGLGXPXPPLXXPGGGGP--------XPPXXPXGGXPPPXXXXXP----P 993
            P  +    P  G+      +  PG  GP          P  P G  P P     P     
Sbjct: 173  PFAMDPARPNPGMPPGPQMMRPPGNVGPPRTGTPTQPQPPRPGGMYPQPPGVPMPMRPQM 232

Query: 994  PPXGXGGXXXXXXXXXXXXXXXXXFXXGGGPPPXGPP---XXPRXXGXPXPLXXXXXXPG 1164
            PP    G                     G PPP  PP     PR    P         P 
Sbjct: 233  PPGAVPGMQPGMQPRPPSAQGMQRPPMMGQPPPIRPPNPMGGPRPQISPQNSNLSGGMPS 292

Query: 1165 GXXG-GAPPXXXGGGPPPGP 1221
            G  G   PP    GG P GP
Sbjct: 293  GMVGPPRPPMPMQGGAPGGP 312



 Score = 28.3 bits (60), Expect = 0.55
 Identities = 19/60 (31%), Positives = 19/60 (31%)
 Frame = -2

Query: 856 PXGGXPPXGXXGGXXTPXGGGPPXTGXREXXGGRXPGGAPXXKPRGXXPXXXXGPPGXAP 677
           P  G PP         P   GPP TG         PGG     P    P     PPG  P
Sbjct: 181 PNPGMPPGPQM--MRPPGNVGPPRTGTPTQPQPPRPGGMYPQPPGVPMPMRPQMPPGAVP 238



 Score = 25.8 bits (54), Expect = 2.9
 Identities = 16/50 (32%), Positives = 17/50 (34%)
 Frame = -2

Query: 889 PXPRXGXXXGGPXGGXPPXGXXGGXXTPXGGGPPXTGXREXXGGRXPGGA 740
           P P  G   GGP  G  P         P    PP +G     GG  P  A
Sbjct: 301 PMPMQGGAPGGPPQGMRPNFYNRPMGDPQTSRPP-SGNDNMGGGPPPSSA 349



 Score = 25.0 bits (52), Expect = 5.1
 Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
 Frame = -1

Query: 890 PXPPXGXXXXRPXGGX-PPXGGXRGKXHPXRXGPPXDRXPG 771
           P  P G    RP G   PP  G   +  P R G    + PG
Sbjct: 183 PGMPPGPQMMRPPGNVGPPRTGTPTQPQPPRPGGMYPQPPG 223


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 29.9 bits (64), Expect = 0.18
 Identities = 26/100 (26%), Positives = 26/100 (26%), Gaps = 4/100 (4%)
 Frame = +1

Query: 928  GPXPPXXPXGGXPPPXXXXXPPPPXGXGGXXXXXXXXXXXXXXXXXFXXGGGPPPXGPPX 1107
            GP PP  P G          PPP                             PPP  PP 
Sbjct: 529  GPPPPPPPGGAVLNIPPQFLPPPLNLLRAPFFPLNPAQLRFPAGFPNLPNAQPPPAPPPP 588

Query: 1108 XPRXXGXPXPLXXXXXXPGGXXGGAPP----XXXGGGPPP 1215
             P     P P        GG  G  PP       GG  PP
Sbjct: 589  PPM---GPPPSPLAGGPLGGPAGSRPPLPNLLGFGGAAPP 625



 Score = 28.3 bits (60), Expect = 0.55
 Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +1

Query: 820 PLXPPXGGXPPXGLXXXXPXGGLGXPXPPL-XXPGGGGPXPP 942
           P  PP  G PP  L    P GG     PPL    G GG  PP
Sbjct: 585 PPPPPPMGPPPSPL-AGGPLGGPAGSRPPLPNLLGFGGAAPP 625



 Score = 26.2 bits (55), Expect = 2.2
 Identities = 24/73 (32%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
 Frame = +1

Query: 820  PLXPPXGGX----PPXGLXXXXPXGGLGXPXPPLXX-----PGGGGPXPPXXPXGGXPPP 972
            P  PP GG     PP  L    P   L  P  PL       P G    P   P    PPP
Sbjct: 531  PPPPPPGGAVLNIPPQFLPP--PLNLLRAPFFPLNPAQLRFPAGFPNLPNAQPPPAPPPP 588

Query: 973  XXXXXPPPPXGXG 1011
                 PP P   G
Sbjct: 589  PPMGPPPSPLAGG 601



 Score = 25.8 bits (54), Expect = 2.9
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 1220 GPGGGPPPXXXGGAPPXXPP 1161
            GP G PPP   GGA    PP
Sbjct: 526  GPLGPPPPPPPGGAVLNIPP 545



 Score = 25.8 bits (54), Expect = 2.9
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = -2

Query: 889 PXPRXGXXXGGPXGGXPPXGXXGGXXTPXGGGPPXT 782
           P P  G   GGP G  PP     G     G  PP T
Sbjct: 595 PSPLAGGPLGGPAGSRPPLPNLLGF---GGAAPPVT 627



 Score = 24.6 bits (51), Expect = 6.7
 Identities = 17/47 (36%), Positives = 17/47 (36%)
 Frame = -1

Query: 1217 PGGGPPPXXXGGAPPXXPPGXXXXXXRGXGXPXXRGXXGGPXGGGPP 1077
            P   PPP     APP  PP            P   G  GGP G  PP
Sbjct: 577  PNAQPPP-----APPPPPPMGPPPS------PLAGGPLGGPAGSRPP 612


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP protein.
          Length = 151

 Score = 27.5 bits (58), Expect = 0.95
 Identities = 22/73 (30%), Positives = 23/73 (31%)
 Frame = +1

Query: 793  GPXRXGXXFPLXPPXGGXPPXGLXXXXPXGGLGXPXPPLXXPGGGGPXPPXXPXGGXPPP 972
            GP +     P  PP    PP       P    G P  P    G  GP PP       PP 
Sbjct: 70   GPPKPNISIP--PPTMNMPPR------PGMIPGMPGAPPLLMGPNGPLPPPMMGMRPPPM 121

Query: 973  XXXXXPPPPXGXG 1011
                   PP G G
Sbjct: 122  MVPTMGMPPMGLG 134


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
            differentiation regulator protein.
          Length = 1283

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
 Frame = +1

Query: 1162 GGXXGGAPPXXXG--GGPPPG 1218
            GG  GGAP    G  GGP PG
Sbjct: 205  GGSGGGAPGGGGGSSGGPGPG 225


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.316    0.160    0.583 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 872,461
Number of Sequences: 2352
Number of extensions: 19815
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 157681260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)