Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_M19
         (1367 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.22 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.50
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +1

Query: 1123 GXPXPLXXXXXXPGGXXGGAPPXXXGGGPPPGP 1221
            G P P       P     G+PP    G PP GP
Sbjct: 19   GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51



 Score = 26.2 bits (55), Expect = 0.66
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -1

Query: 1241 PXXXXXXGPGGGPPPXXXGGAPPXXPP 1161
            P       P  GPPP    GAPP   P
Sbjct: 34   PQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.8 bits (54), Expect = 0.88
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 1217 PGGGPPPXXXGGAPPXXPPG 1158
            P  G PP    G PP  PPG
Sbjct: 34   PQRGSPPNPSQGPPPGGPPG 53



 Score = 24.6 bits (51), Expect(2) = 0.22
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 1081 GPPPXGPPXXP 1113
            GPPP GPP  P
Sbjct: 45   GPPPGGPPGAP 55



 Score = 23.0 bits (47), Expect = 6.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 828 SPXGGXPPXGPPXXXP 875
           +P  G PP GPP   P
Sbjct: 41  NPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 8.2
 Identities = 10/31 (32%), Positives = 11/31 (35%)
 Frame = -2

Query: 889 PXPRXGXXXGGPXGGXPPXGXXGGXXTPXGG 797
           P P  G   GGP G  P         +P  G
Sbjct: 40  PNPSQGPPPGGPPGAPPSQNPSQMMISPASG 70



 Score = 21.4 bits (43), Expect(2) = 0.22
 Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 5/38 (13%)
 Frame = +1

Query: 916  PGGGGPXPPXXPXGGXPPPXXXXXP-----PPPXGXGG 1014
            P  G P P   P      P     P     PPP G  G
Sbjct: 16   PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPG 53


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 487 PLXPPPPXXGG 519
           PL PPPP  GG
Sbjct: 374 PLPPPPPIRGG 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.160    0.583 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 298,460
Number of Sequences: 438
Number of extensions: 10997
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 47424885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)