Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_M18
         (1225 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    24   2.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   5.4  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        23   5.4  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   9.5  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 2/18 (11%)
 Frame = -3

Query: 167 VAWNSFYYFNSFR--LPW 120
           +AW  FY+F S R  LPW
Sbjct: 81  LAWAIFYFFMSMRSELPW 98


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -1

Query: 913 KCFKTMLISCSFIFLNVH*H*FINFFGIPILSIIIDKFTIW 791
           K  K  L++ S  F+    +  INF GI  L  I   FTIW
Sbjct: 275 KLAKVALMTISLWFMAWTPYLVINFSGIFNLVKISPLFTIW 315


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -1

Query: 913 KCFKTMLISCSFIFLNVH*H*FINFFGIPILSIIIDKFTIW 791
           K  K  L++ S  F+    +  INF GI  L  I   FTIW
Sbjct: 25  KLAKVALMTISLWFMAWTPYLVINFSGIFNLVKISPLFTIW 65


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 265 NMEVNGSNRCSWRRLDGFYDVCQKRKTG 348
           N++V G+         G YD+  KR+ G
Sbjct: 304 NLQVRGTRGEHTEAEGGIYDISNKRRLG 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 268,957
Number of Sequences: 438
Number of extensions: 5802
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 41661861
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)